| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0443 |
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| Symbol | |
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| ID | 5660843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 550745 |
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| End bp | 552652 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641234980 |
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| Product | selenocysteine-specific translation elongation factor |
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| Protein accession | YP_001500306 |
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| Protein GI | 157960272 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.363793 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGTTG TTACTTCAGG CCATGTGGAC CACGGTAAAA CCAGCCTGAT TCAAGCGCTA
ACTGGCACCG ATGCCGACCG CTTACCGGAA GAAAAACAGC GTGGCATGAC CATAGAGCTT
GGCTACGCCT TTATGGATTT ATCAGATGGT GAGCGCCTAG CTTTTGTCGA TGTGCCGGGC
CACAGCAAAT TTATTAATAC CATGCTGGCT GGGGTGAGCT GCGCCAAACA TGCGCTATTG
ATCATCGCTT GTGATGATGG CGTGATGCCG CAAACTTATG AGCATTTAGC CATCTTGCAG
CTGCTTAATC TTGAACACTT AATCGTGGTG CTAACCAAGC AAGACAAGGT CGATGCCACC
AGAGTCGATG AAGTTAAAGA GCAAGTGAGT GAGCTATTGG CGCAGCACCA AAGACAAAGC
CCAATCTTTG TGGTGTCGGC GCAATCTGGT TTTGGTATCG ACGCGCTTAA GCTTGCTATC
ACTGAGCTTG CCGAGTCACA GATAACAGCG TTAAGCGAGA CCGGCGAGCA AGCCAGCTTT
CGTATGGCAA TCGACAGAGC TTTTAGCGTA AAAGGTGCAG GTCTTGTGGT AACTGGTACT
GTGATTAGTG GTCAAGTCAG CCAAGGGCAA AGCTTGTATC TATCAGGCCA GCGTAAACCA
GTAAAAGTCA GAACCCTTCA CAGTCAAGGA CGGGTAAGTA ATAGCGCGCA TCATTGTCAG
CGGGTGGCGC TCAATATTAC TGGAGTCGAC CAACATCGCG GCGCAGAGCG CGGAGATTGG
TTAACTGCGC TAGCGCCAGC GGCCGAAGCG CCGAACGTGA TTTGTGGCGT ATTTGAATCT
TGCCTGCCGT TTAAGCATTG GCAAAATGTG CAAGTGCATT TAGGTAATCG CCATACCACG
GCGCGCTTAG GCTTACTGCA AAACCTTGAA GATGGCACGG CCTTGGTTGA GCTGCAATGC
GAGCAGCCCC TTCATAGTGT GGAGCAAGAC AGAATCATCG TGCGTGACAG CGCCGCTAAA
AGCACATTAG GTGCGCTGCG GGTATTAGAC ATTAACCCGC CAACTCGAGC AAAGCGCAGT
GTTGAGCGCT TAGCTTACCT AGAAAACCTT AAACAGTGCG ACTCACTAAC GGCCAGTTTG
CAAGTTCAAA TAAACCATCA CTGCGTTCCA AAGTCCGCTT TCATGTGGGC TAATCAGCTA
ACAGAGCAAA CCGCTTGTTT GGCGGACAAA CAGGTGATCA GCCTCGATGG TTATTTGTTA
TCCAGCATAT TACAAGAGCA GATTGAAGCG CAGTTGCTGG CACTCATCGC CGATTATCAT
CAGCAGTCGC CAGAGCTGTT AGGGTTGAGT ATTAATCGAT TGCAGCGTAT GACTCACAAC
CAATATCCAT TGCCTGTGCT ACTTAAACTT ACCGATGGTC TCAGAGAGCA AAAACTACTG
CAAAGTACCC GTGGCTTATT GCATCTGCCA CGGCATAACT TGGCGCTGTC AGACGCTGAG
CTACAGCTGT GGTCACAGAT AAAGCAGCAG ATGCTTAGTG CTAACGGGCC ATTATGGTCA
TCAGACTTAG CATCAACGCT AAACCTTGAG TTGACTACAG TGCGGGCGCT ATGCCGTAAG
CTTATCCAGC TGGGGTATCT GTCGGCGATT ATTAAAGACA GATTTATGCT CACCGAAAGC
CTGTATTTCT ACGCCGATGT CATTCGTAAT CAAATCAATG TGAGTGGTGA AATCAAGACC
GCCGATTTTA ATTCAATCAT TAAGCTTGGC CGCAAAGCCA GTATTCAGTT GTTAGAATTT
TATGACCGCA GTGGATTAAC GTGGCGCAAG AAGAAAGACA ATTCGAGAGT GATTAGAGAT
GGCAGCATTT TTATAGCAAG TGATTTGGCG GAAGAACATA GGAGTTGA
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| Protein sequence | MIVVTSGHVD HGKTSLIQAL TGTDADRLPE EKQRGMTIEL GYAFMDLSDG ERLAFVDVPG
HSKFINTMLA GVSCAKHALL IIACDDGVMP QTYEHLAILQ LLNLEHLIVV LTKQDKVDAT
RVDEVKEQVS ELLAQHQRQS PIFVVSAQSG FGIDALKLAI TELAESQITA LSETGEQASF
RMAIDRAFSV KGAGLVVTGT VISGQVSQGQ SLYLSGQRKP VKVRTLHSQG RVSNSAHHCQ
RVALNITGVD QHRGAERGDW LTALAPAAEA PNVICGVFES CLPFKHWQNV QVHLGNRHTT
ARLGLLQNLE DGTALVELQC EQPLHSVEQD RIIVRDSAAK STLGALRVLD INPPTRAKRS
VERLAYLENL KQCDSLTASL QVQINHHCVP KSAFMWANQL TEQTACLADK QVISLDGYLL
SSILQEQIEA QLLALIADYH QQSPELLGLS INRLQRMTHN QYPLPVLLKL TDGLREQKLL
QSTRGLLHLP RHNLALSDAE LQLWSQIKQQ MLSANGPLWS SDLASTLNLE LTTVRALCRK
LIQLGYLSAI IKDRFMLTES LYFYADVIRN QINVSGEIKT ADFNSIIKLG RKASIQLLEF
YDRSGLTWRK KKDNSRVIRD GSIFIASDLA EEHRS
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