More than 300 homologs were found in PanDaTox collection
for query gene Spea_0443 on replicon NC_009901
Organism: Shewanella pealeana ATCC 700345



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009901  Spea_0443  selenocysteine-specific translation elongation factor  100 
 
 
635 aa  1301    Shewanella pealeana ATCC 700345  Bacteria  normal  0.363793  n/a   
 
 
-
 
NC_011663  Sbal223_0109  selenocysteine-specific translation elongation factor  46.74 
 
 
681 aa  535  1e-151  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0107  selenocysteine-specific translation elongation factor SelB  46.62 
 
 
673 aa  529  1e-149  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0102  selenocysteine-specific translation elongation factor SelB  46.62 
 
 
673 aa  531  1e-149  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0107  selenocysteine-specific translation elongation factor SelB  46.78 
 
 
673 aa  531  1e-149  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0110  selenocysteine-specific translation elongation factor  45.72 
 
 
681 aa  527  1e-148  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0105  selenocysteine-specific translation elongation factor  46.27 
 
 
681 aa  528  1e-148  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_0106  selenocysteine-specific translation elongation factor  45.44 
 
 
673 aa  522  1e-146  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009832  Spro_0091  selenocysteinyl-tRNA-specific translation factor  43.54 
 
 
615 aa  482  1e-134  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03445  selenocysteinyl-tRNA-specific translation factor  41.05 
 
 
614 aa  469  1.0000000000000001e-131  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03396  hypothetical protein  41.05 
 
 
614 aa  469  1.0000000000000001e-131  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0123  selenocysteinyl-tRNA-specific translation factor  40.89 
 
 
614 aa  466  9.999999999999999e-131  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_0141  selenocysteinyl-tRNA-specific translation factor  40.51 
 
 
621 aa  466  9.999999999999999e-131  Enterobacter sp. 638  Bacteria  normal  0.645753  normal  0.973594 
 
 
-
 
NC_010498  EcSMS35_3918  selenocysteinyl-tRNA-specific translation factor  40.89 
 
 
614 aa  467  9.999999999999999e-131  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.696319 
 
 
-
 
CP001637  EcDH1_0118  selenocysteine-specific translation elongation factor  40.57 
 
 
614 aa  464  1e-129  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4088  selenocysteinyl-tRNA-specific translation factor  40.57 
 
 
614 aa  462  1e-129  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3795  selenocysteinyl-tRNA-specific translation factor  40.57 
 
 
614 aa  463  1e-129  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_4114  selenocysteinyl-tRNA-specific translation factor  41.93 
 
 
657 aa  459  9.999999999999999e-129  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4961  selenocysteinyl-tRNA-specific translation factor  40.57 
 
 
614 aa  461  9.999999999999999e-129  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.503297  normal 
 
 
-
 
NC_010658  SbBS512_E4005  selenocysteinyl-tRNA-specific translation factor  40.41 
 
 
614 aa  462  9.999999999999999e-129  Shigella boydii CDC 3083-94  Bacteria  normal  0.799296  n/a   
 
 
-
 
NC_010465  YPK_0043  selenocysteinyl-tRNA-specific translation factor  41.78 
 
 
657 aa  456  1e-127  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A4067  selenocysteinyl-tRNA-specific translation factor  39.62 
 
 
616 aa  449  1e-125  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A3882  selenocysteinyl-tRNA-specific translation factor  39.78 
 
 
616 aa  452  1e-125  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A3960  selenocysteinyl-tRNA-specific translation factor  39.46 
 
 
616 aa  447  1.0000000000000001e-124  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.293877  normal  0.449434 
 
 
-
 
NC_011083  SeHA_C4005  selenocysteinyl-tRNA-specific translation factor  39.3 
 
 
616 aa  448  1.0000000000000001e-124  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.187255 
 
 
-
 
NC_011149  SeAg_B3896  selenocysteinyl-tRNA-specific translation factor  39.3 
 
 
616 aa  447  1.0000000000000001e-124  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_63530  selenocysteine-specific elongation factor  39.54 
 
 
641 aa  410  1e-113  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.440984  normal 
 
 
-
 
NC_009656  PSPA7_5526  selenocysteine-specific elongation factor  40.44 
 
 
641 aa  399  9.999999999999999e-111  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0537  selenocysteine-specific translation elongation factor  39.78 
 
 
640 aa  378  1e-103  Pseudomonas putida GB-1  Bacteria  normal  0.82907  normal 
 
 
-
 
NC_007952  Bxe_B2548  selenocysteine-specific translation elongation factor SelB  37.3 
 
 
637 aa  378  1e-103  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.88579 
 
 
-
 
NC_002947  PP_0494  selenocysteine-specific translation elongation factor  39.02 
 
 
640 aa  367  1e-100  Pseudomonas putida KT2440  Bacteria  normal  0.190998  normal 
 
 
-
 
NC_009512  Pput_0528  selenocysteine-specific translation elongation factor  38.85 
 
 
640 aa  366  1e-100  Pseudomonas putida F1  Bacteria  normal  normal  0.465523 
 
 
-
 
NC_010676  Bphyt_6555  selenocysteine-specific translation elongation factor  36.62 
 
 
637 aa  369  1e-100  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0281066  hitchhiker  0.00125424 
 
 
-
 
NC_010501  PputW619_0549  selenocysteine-specific translation elongation factor  37.91 
 
 
640 aa  364  2e-99  Pseudomonas putida W619  Bacteria  normal  normal  0.177696 
 
 
-
 
NC_010002  Daci_3485  selenocysteine-specific translation elongation factor  38.36 
 
 
643 aa  360  3e-98  Delftia acidovorans SPH-1  Bacteria  normal  0.035122  normal 
 
 
-
 
NC_007492  Pfl01_2707  selenocysteine-specific translation elongation factor SelB  37.63 
 
 
636 aa  354  2e-96  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.285696 
 
 
-
 
NC_010623  Bphy_4523  selenocysteine-specific translation elongation factor  35.28 
 
 
646 aa  351  2e-95  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4592  selenocysteine-specific translation elongation factor  35.74 
 
 
641 aa  348  1e-94  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.251602  normal 
 
 
-
 
NC_010552  BamMC406_3884  selenocysteine-specific translation elongation factor  35.07 
 
 
641 aa  344  2e-93  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0882754  normal 
 
 
-
 
NC_007511  Bcep18194_B2095  selenocysteine-specific translation elongation factor SelB  36.18 
 
 
641 aa  344  2.9999999999999997e-93  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0712  selenocysteine-specific translation elongation factor  34.86 
 
 
641 aa  340  4e-92  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1810  selenocysteine-specific translation elongation factor SelB  34.91 
 
 
627 aa  339  8e-92  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.251758 
 
 
-
 
NC_010515  Bcenmc03_3539  selenocysteine-specific translation elongation factor  35.55 
 
 
641 aa  339  9.999999999999999e-92  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.791284  normal 
 
 
-
 
NC_008061  Bcen_4377  selenocysteine-specific translation elongation factor  35.55 
 
 
641 aa  339  9.999999999999999e-92  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.574205  n/a   
 
 
-
 
NC_008543  Bcen2424_3989  selenocysteine-specific translation elongation factor  35.55 
 
 
641 aa  339  9.999999999999999e-92  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_3382  selenocysteine-specific translation elongation factor  34.44 
 
 
641 aa  337  3.9999999999999995e-91  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_006349  BMAA1678  selenocysteine-specific translation elongation factor  35.43 
 
 
641 aa  333  6e-90  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1904  translation elongation factor, selenocysteine-specific  35.43 
 
 
651 aa  333  6e-90  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2391  translation elongation factor, selenocysteine-specific  35.43 
 
 
651 aa  333  6e-90  Burkholderia pseudomallei 668  Bacteria  normal  0.451398  n/a   
 
 
-
 
NC_009079  BMA10247_A0576  translation elongation factor, selenocysteine-specific  35.43 
 
 
651 aa  333  6e-90  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1697  translation elongation factor, selenocysteine-specific  35.43 
 
 
651 aa  333  6e-90  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0725  selenocysteine-specific translation elongation factor  35.28 
 
 
641 aa  332  1e-89  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2254  translation elongation factor, selenocysteine-specific  35.12 
 
 
651 aa  330  5.0000000000000004e-89  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0142669  n/a   
 
 
-
 
NC_009668  Oant_2869  selenocysteine-specific translation elongation factor  35.37 
 
 
655 aa  330  6e-89  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0571166  n/a   
 
 
-
 
NC_008686  Pden_2825  selenocysteine-specific translation elongation factor  35.38 
 
 
643 aa  306  8.000000000000001e-82  Paracoccus denitrificans PD1222  Bacteria  normal  0.518854  normal 
 
 
-
 
NC_011071  Smal_3266  selenocysteine-specific translation elongation factor  36.72 
 
 
643 aa  301  4e-80  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.901802  normal 
 
 
-
 
NC_013223  Dret_0762  selenocysteine-specific translation elongation factor  32.86 
 
 
634 aa  286  1.0000000000000001e-75  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.97012  normal 
 
 
-
 
NC_007519  Dde_3173  selenocysteine-specific translation elongation factor SelB  31.43 
 
 
644 aa  270  4e-71  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3567  selenocysteine-specific translation elongation factor  32.11 
 
 
636 aa  268  2e-70  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0102  selenocysteine-specific translation elongation factor  32.63 
 
 
636 aa  263  1e-68  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2019  selenocysteine-specific translation elongation factor  32.04 
 
 
634 aa  261  3e-68  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0284313  n/a   
 
 
-
 
NC_012918  GM21_0034  selenocysteine-specific translation elongation factor  32.82 
 
 
636 aa  260  5.0000000000000005e-68  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007517  Gmet_3415  selenocysteine-specific translation elongation factor SelB  31.74 
 
 
636 aa  258  2e-67  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_1220  selenocysteine-specific translation elongation factor  31.17 
 
 
642 aa  257  4e-67  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.00584658  normal  0.153868 
 
 
-
 
NC_008148  Rxyl_1982  selenocysteine-specific translation elongation factor SelB  33.12 
 
 
612 aa  256  8e-67  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.869997  n/a   
 
 
-
 
NC_011146  Gbem_0035  selenocysteine-specific translation elongation factor  32.52 
 
 
636 aa  255  2.0000000000000002e-66  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2506  selenocysteine-specific translation elongation factor  32.01 
 
 
650 aa  251  2e-65  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_010718  Nther_1114  selenocysteine-specific translation elongation factor  28.48 
 
 
633 aa  250  6e-65  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.366063 
 
 
-
 
NC_007644  Moth_2503  selenocysteine-specific translation elongation factor SelB  30.19 
 
 
634 aa  247  4e-64  Moorella thermoacetica ATCC 39073  Bacteria  decreased coverage  0.00650537  normal  0.143065 
 
 
-
 
NC_010424  Daud_1094  selenocysteine-specific translation elongation factor  36.33 
 
 
635 aa  245  1.9999999999999999e-63  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_3332  selenocysteine-specific translation elongation factor  31.39 
 
 
691 aa  245  1.9999999999999999e-63  Methylocella silvestris BL2  Bacteria  n/a    normal  0.665581 
 
 
-
 
NC_013385  Adeg_0673  selenocysteine-specific translation elongation factor  31.83 
 
 
635 aa  244  3e-63  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0164  selenocysteine-specific translation elongation factor  30.2 
 
 
636 aa  243  6e-63  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2185  selenocysteine-specific translation elongation factor  31.42 
 
 
635 aa  242  1e-62  Desulfotomaculum reducens MI-1  Bacteria  normal  0.573253  n/a   
 
 
-
 
NC_008751  Dvul_2441  selenocysteine-specific translation elongation factor  31.98 
 
 
642 aa  242  2e-62  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1647  selenocysteine-specific translation elongation factor  30.53 
 
 
644 aa  241  2.9999999999999997e-62  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.00236334  hitchhiker  0.000000010303 
 
 
-
 
NC_008009  Acid345_4628  selenocysteine-specific translation elongation factor SelB  31.09 
 
 
628 aa  240  5e-62  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.889697 
 
 
-
 
NC_013204  Elen_1693  selenocysteine-specific translation elongation factor  31.17 
 
 
643 aa  237  6e-61  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.986647 
 
 
-
 
NC_013525  Tter_1385  selenocysteine-specific translation elongation factor  30.65 
 
 
619 aa  236  1.0000000000000001e-60  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013522  Taci_0769  selenocysteine-specific translation elongation factor  31.71 
 
 
629 aa  234  3e-60  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.709604  n/a   
 
 
-
 
NC_009943  Dole_0653  selenocysteine-specific translation elongation factor  28.96 
 
 
636 aa  234  4.0000000000000004e-60  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0190681  n/a   
 
 
-
 
NC_008346  Swol_2560  selenocysteine-specific translation elongation factor  37.7 
 
 
631 aa  231  4e-59  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.475206  n/a   
 
 
-
 
NC_013440  Hoch_6613  selenocysteine-specific translation elongation factor  29.92 
 
 
648 aa  231  4e-59  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0913819 
 
 
-
 
NC_011830  Dhaf_4266  selenocysteine-specific translation elongation factor  31.12 
 
 
634 aa  231  4e-59  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0832  selenocysteine-specific translation elongation factor  30.84 
 
 
637 aa  230  7e-59  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_11400  selenocysteine-specific elongation factor SelB  37.63 
 
 
657 aa  229  1e-58  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_011883  Ddes_2086  selenocysteine-specific translation elongation factor  30.08 
 
 
657 aa  229  1e-58  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.0347898  n/a   
 
 
-
 
NC_008262  CPR_2084  selenocysteine-specific translation elongation factor  28.75 
 
 
635 aa  222  1.9999999999999999e-56  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_25300  selenocysteine-specific elongation factor SelB  35.75 
 
 
641 aa  219  8.999999999999998e-56  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.291858 
 
 
-
 
NC_008261  CPF_2372  selenocysteine-specific translation elongation factor  28.26 
 
 
635 aa  219  1e-55  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_1632  selenocysteine-specific translation elongation factor  34.85 
 
 
586 aa  218  2e-55  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.318083  n/a   
 
 
-
 
NC_011145  AnaeK_0447  selenocysteine-specific translation elongation factor  29.29 
 
 
649 aa  216  8e-55  Anaeromyxobacter sp. K  Bacteria  normal  0.436923  n/a   
 
 
-
 
NC_011891  A2cp1_0448  selenocysteine-specific translation elongation factor  28.85 
 
 
649 aa  215  1.9999999999999998e-54  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4150  selenocysteine-specific translation elongation factor  30.21 
 
 
649 aa  214  2.9999999999999995e-54  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  hitchhiker  0.00997007 
 
 
-
 
NC_007760  Adeh_0419  selenocysteine-specific translation elongation factor SelB  28.34 
 
 
649 aa  212  1e-53  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_16940  selenocysteine-specific translation elongation factor SelB  36.61 
 
 
583 aa  207  4e-52  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.213421  normal  0.332319 
 
 
-
 
NC_013595  Sros_3739  selenocysteine-specific translation elongation factor  37.43 
 
 
591 aa  207  6e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.267457  normal  0.0215815 
 
 
-
 
NC_009972  Haur_1123  selenocysteine-specific translation elongation factor  32.76 
 
 
627 aa  205  2e-51  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_5282  selenocysteine-specific translation elongation factor  32.39 
 
 
603 aa  202  9.999999999999999e-51  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009802  CCC13826_0756  selenocysteine-specific translation elongation factor  28.51 
 
 
606 aa  201  3.9999999999999996e-50  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>