Gene Strop_0585 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_0585 
Symbol 
ID5057026 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp658125 
End bp659939 
Gene Length1815 bp 
Protein Length604 aa 
Translation table11 
GC content70% 
IMG OID640472855 
Productselenocysteine-specific translation elongation factor 
Protein accessionYP_001157443 
Protein GI145593146 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG3276] Selenocysteine-specific translation elongation factor 
TIGRFAM ID[TIGR00475] selenocysteine-specific elongation factor SelB 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCGTGA TCGCCACAGC CGGTCACGTC GACCACGGAA AGTCGACGCT GGTGCGGGCA 
CTGACCGGCA TGGAACCCGA CCGCTGGGCC GAGGAACGCC GCCGCGGCAT GACCATCGAC
CTCGGGTTCG CCTGGACCAC CCTCGACAAC GAACACATGA CCGCGTTCGT CGACGTGCCC
GGCCACCAGC GCTTCGTGTC GAACATGCTG GCCGGCGTCG GGCCGGTCAC CGCCGTCCTG
TTCGTCGTCG CCGCCGACGA GGGCTGGCGA CGGCAGTCGG CGGAGCATCT GGCGGCGCTG
CAGGCCCTTG ACGTGCGCCA CGGCGTCCTC GCGGTCACCC GCTGCGACCT CGCCGACCCT
GGCCCAGCCA TCGAGCAGGC ACACGAACGG CTACGCGACA CCGGTCTGGC CGGAATGCCC
GCGGTCGCAG TATCCGCGGC CTCCGGCCAC GGCCTCGCCG CTCTGCGCAC CGCGTTGCGC
GAACTCACGC GGGCGCTTCC GGCGCCACGG ACGGGTCCAG CGAGACTGTG GGTCGATCGA
TCCTTCACCG TACGGGGAAG CGGCACCGTG GTCACCGGAA CACTCGGGTC CGGCACCATG
GCGGTTGGCG ACGAACTCGT ACTCGAACCC GCAGGTCGAC CCGTACGGAT CCGCGGCCTG
CAAAGTCTCA AGACCAAGGT CGAGCGAGCC AAGGCGGTGT CCCGGCTAGC GGTCAACCTA
CGCGGCCTCG GCGCCAACGA GGTCCGACGC GGGTACGCGC TGGTCCAGCC GGGCGCCTTC
ACGAGGGTCA CCACCATGGA CGTACGGCTG ATAAGGCAAG CCGACAGGTT ACCTACCCAC
CTCGTCCTGC ATATCGGATC GGCGGCGGTG CCCGTACGCC TGAGAAAACT CGGACCACAC
GCCGCCCGCC TCGCCCTGAC CACCGCGCTA CCGCTACACG TGGGCGAGCG AGGCCTGCTG
CGCGACCCAG GCGCCCAGCA CATCGTCGCC GGCATCGTCG TTCTCGACAC CATGCCCCCG
CAACTCCACG CCCGAGGCGA CGCCAGACGC CGGGCCACAC AACTGACGGG CATGAGCGAT
CGGCCCGACG CGGTTGCTGA CATCGCCCGT CGAGGGGCTG TCAGGCGCGA AGCGCTCGTC
ACCGCAGGAG TTCTAGCCTA CGAAACCGAG GTGCCGGCAG ACGTCGTCGC CGTAGGCGAG
TGGCTGGTCG CCCCAACCCT CTGGAAGACC TGGGTGTCCG CGTTGAGCGC AGCTGTCGAC
GAGTGGGCGG CGGCGAACCC GCTCTCACCC GGCCTTGCGC CGGAGGCGGC TGCCGGGCGG
GCCGGCATCC CCGACCTCCG GCTGATCGGA GCGCTGATGG CCGACGCGGG GCTCGTGCTC
GGCAGCGGCG CCATGCGCCG CAAGGATGCC AAGATCCGGT TCCCCGAACC AGTGCGCCGC
GCACTCGACG AGATTCGCGC ACGACTGCGT GAAGACCCGT TCGCCGCCCC CAGCGCCGAG
GAACTCGCAC GACACCGGTT GTCCCGGCAG CACCTGGCCG CCGCGGTCAA CGCGGGTCTG
CTGTGCCGTA TCGCACCCGA TGTATACCTG CTACCCGACG CGCCGACCGA GGCGGCGCGC
CGACTCGCGG GCATCGATCA GCCATTCACT GTCAGCCAGG CCCGCATCGC ATGGGGCACC
AGCCGCCGCG TCGCGGTACC GCTTCTCGAG TACCTCGACA ATCAGGGCGC CACCCGACGC
ACGGGCAACA CACATCGGTT GTTGACTTTC CGTACTGTAG CTGGGCCTTC CCTCCCTGAG
CCTCAATACC ACTGA
 
Protein sequence
MFVIATAGHV DHGKSTLVRA LTGMEPDRWA EERRRGMTID LGFAWTTLDN EHMTAFVDVP 
GHQRFVSNML AGVGPVTAVL FVVAADEGWR RQSAEHLAAL QALDVRHGVL AVTRCDLADP
GPAIEQAHER LRDTGLAGMP AVAVSAASGH GLAALRTALR ELTRALPAPR TGPARLWVDR
SFTVRGSGTV VTGTLGSGTM AVGDELVLEP AGRPVRIRGL QSLKTKVERA KAVSRLAVNL
RGLGANEVRR GYALVQPGAF TRVTTMDVRL IRQADRLPTH LVLHIGSAAV PVRLRKLGPH
AARLALTTAL PLHVGERGLL RDPGAQHIVA GIVVLDTMPP QLHARGDARR RATQLTGMSD
RPDAVADIAR RGAVRREALV TAGVLAYETE VPADVVAVGE WLVAPTLWKT WVSALSAAVD
EWAAANPLSP GLAPEAAAGR AGIPDLRLIG ALMADAGLVL GSGAMRRKDA KIRFPEPVRR
ALDEIRARLR EDPFAAPSAE ELARHRLSRQ HLAAAVNAGL LCRIAPDVYL LPDAPTEAAR
RLAGIDQPFT VSQARIAWGT SRRVAVPLLE YLDNQGATRR TGNTHRLLTF RTVAGPSLPE
PQYH