| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_16940 |
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| Symbol | |
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| ID | 8387026 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 1745599 |
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| End bp | 1747350 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644975770 |
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| Product | selenocysteine-specific translation elongation factor SelB |
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| Protein accession | YP_003133553 |
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| Protein GI | 257055721 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00475] selenocysteine-specific elongation factor SelB |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.213421 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.332319 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATGTCG TAGCCACGGC AGGGCACGTC GATCACGGCA AGTCCACTCT GGTGAAGGCC
TTGACCGGCA TGGAACCCGA TCGACTCGGC GAGGAACGCC GCAGAGGCCT GACCATCGAC
CTCGGATTCG TGTGGACCGA CGTGGCCGGT CAGACGTTCG CGTTCGTCGA CGTACCGGGA
CACCAGCGGT TCGTGCCGAC CATGCTCGCG GGCACCGGAC CGGTGACCGC CGTGCTGTTC
GTGGTGGCGG CCGACGAAGG GTGGCAGGCC CAGTCCAGCG AACACCTCGC CGCGCTCGAC
GCGTTCGGGG TCCGACACGG CGTCCTCGCC GTGACCAAGG CCGACAGGGC GGATCCGCGG
CCCGTGCTCG TCGAAGCGAG CGAACGCCTC GCGGCGAGTA GCCTCGGCCG CGTTCCCGCC
GTCGCGGTGA GTGCGCACAC GGGCGCGGGA ATCGACGCGT TGAGGGCGGA ACTGGCGACG
CTGGGACGGG AGCTTCCCGC CGCTGACACC GAGGCGGACG TACGGCTGTG GGTGGACCGG
GCGTTCACGG TCCACGGTGC GGGCACGGTC GTCACCGGAA CACTCGGCGC GGGTCGACTG
CGGGTCGGTG ACGAACTGGT GTTCGGTCGT GACGGACGTC GTTGCGGGGT GCGGGGACTG
CAGTCGCTGG GACGTGCGTG CGACACCGTG GAGGCGGTGG CGCGGGTCGC GGTGAACCTC
CGCGGCCTCG ACCACCGTGA CATCGACCGG GGAGACGCCC TCCTCACCCC GGACGCCTGG
CGGTACACCC GCGAGATCGA TGTGCGGTTG CGTGGGGACA AGGCGGAGGA CGTGAACCGG
GAACTGACGG TGCACCTCGG TGCCGCCGCC GTCCCCTGCC GGGTGCGTCC ACTCGCGACC
GACCTGGCGC GGCTGTCGTT GTCGGCCGAG CTGCCGTTGC GGGCGGGTGA CCGGGGACTG
CTGCGCGATC CGGGGCAACA CCGTGTCCCC GCGGGGATCG AGGTGCTGGA CCCACGGCCT
CCCGGACTGC GGCGCAGAGG GGCGGCACGA GCCCGTGCGG AGGAACTGGC CCACGATGAC
CCCGCGGCCG GATACGTGCG TCGTCACGGT GTCGTCGCCG TTGCGGAACT GCGGGCACTC
GGCTGGGAGG TACCCGGCTC GCGCGTGGGG CGCTGGGCCG TCGCCGACGG GCTGCTCGAC
CGGCTGGTCG GCCGTGTACG AGACCTGGTG GCCGAGCGGC GTGACCGGGA CCCGTTGGCC
CCTGGGTTGT CGGTGGAGTC CTTGCGTCGG GAACTCGACG TGCCCGACGA CCTCCTGGCC
GCGGTGCTAC CCGCCACCGG GCTCGTCGTC CGCGACGGTG TCGTGGTCGA TCCACGCAGG
CCGTCGGCGT TACCCGATTC GGTCGAACGA GCCGTTCGGG TGGTGCAACA GCGGCTCGAA
CAGGACCCGT TCACCGCGCC CGAGGCGCAC GACCTCGCCG AATTGGGGCT CGGGCCGAAA
CAGCTCGCCG CCGCCGAACG AGCGGGGCGG TTGGTCCGGA TCGCGGACGG TGTCGTCTTG
GGCCCCGACG CGCTGGAAAC GGCCGTGCGT GTGCTGGCGA CCCTGCCCGA GCCGTTCACC
GTCAGCCAGG TCCGACGTGC CCTGGGCACC ACGCGCAGGG TCGCCGTTCC GTTACTCGAA
CGACTCGACG CCGAGGGCAG GACCCGGCGT GCGCCCGACG GCACGAGGAC GCTGCGGCGT
CCCGACCGGT GA
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| Protein sequence | MHVVATAGHV DHGKSTLVKA LTGMEPDRLG EERRRGLTID LGFVWTDVAG QTFAFVDVPG
HQRFVPTMLA GTGPVTAVLF VVAADEGWQA QSSEHLAALD AFGVRHGVLA VTKADRADPR
PVLVEASERL AASSLGRVPA VAVSAHTGAG IDALRAELAT LGRELPAADT EADVRLWVDR
AFTVHGAGTV VTGTLGAGRL RVGDELVFGR DGRRCGVRGL QSLGRACDTV EAVARVAVNL
RGLDHRDIDR GDALLTPDAW RYTREIDVRL RGDKAEDVNR ELTVHLGAAA VPCRVRPLAT
DLARLSLSAE LPLRAGDRGL LRDPGQHRVP AGIEVLDPRP PGLRRRGAAR ARAEELAHDD
PAAGYVRRHG VVAVAELRAL GWEVPGSRVG RWAVADGLLD RLVGRVRDLV AERRDRDPLA
PGLSVESLRR ELDVPDDLLA AVLPATGLVV RDGVVVDPRR PSALPDSVER AVRVVQQRLE
QDPFTAPEAH DLAELGLGPK QLAAAERAGR LVRIADGVVL GPDALETAVR VLATLPEPFT
VSQVRRALGT TRRVAVPLLE RLDAEGRTRR APDGTRTLRR PDR
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