| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0528 |
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| Symbol | |
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| ID | 5193980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 597221 |
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| End bp | 599143 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640584982 |
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| Product | selenocysteine-specific translation elongation factor |
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| Protein accession | YP_001265882 |
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| Protein GI | 148545780 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.465523 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCGTTG GTACCGCTGG CCACATCGAC CACGGCAAGA CCGCACTGCT GCTGGCGCTG
ACCGGCCAGG CCGGCGATCA GCGGCAAGAA GAGCGCGCCC GCGGCATGAC CATCGACCTT
GGCTACCGCT ATGCGGCGCT GAGCGAAGGC GCGCCGCTGA CCGGCTTCAT CGATGTGCCG
GGCCACGAGC GTTTTATCCA CAACATGCTG GCCGGCGCCC ATGGCATCGA CCTGGTGCTG
TTGGTAGTGG CGGCCGACGA CGGGGTCATG CCGCAGACCC GTGAGCACCT GGCGATCATC
GAGCTGCTGG GCATTCCCCA GGCCTTGGTG GCGATCAGCA AATGCGACCG GGTCGAGCCG
TCGCGTCTGG CCGAGGTGCA GATGCAAGTC AGTGAATTGC TGGCGCCTGG GCCATATGCC
GGTGCGCGGC AGTTTCCGCT GTCGAGCATC AGCGGGGAGG GCGTGGACGC GTTGCGCCAG
GCCCTGCTGG AGGCCGAAGC AGGTACACGG CAGCGTAGTG TCGTCGGTGG TTTTCGCCTG
GCCGTCGACC GTGCCTTTGC GGTTACCGGC GCCGGAGTGG TGGTCACCGG CACGGCACTG
GCCGGGCGGG TCAGTGCGGG TGATACGTTG TTGCTGGGCA AGGCCGGCAA GGTGGTACGC
GTGCGTGGCC TGCATGCACA GAACCAGGCC GCGTTGGTGG CAGAAGCAGG CCAACGGGTG
GCGCTGAACA TCGCTGCCGA GCGCCTGGCC GTGGAGCAGG TGCACCGGGG CGACTGGCTG
GTGCCCGAAT GGTTGCATGC GCCCAGTGTT CGGGTGGATA TCGAGCTGAA CCTGTTACCT
GGCGAGAAGC GTGCTTTCGA ACATTTCAGT GCTGTGCATG TGCACCTCGG CACCCAGGAT
GTAACGGCCC GGGTCGCCTT GCTCGAAGGC GAAAGCCTGG CTGCCGGCCA ACGCATGTTT
GCCCAGTTGT TGCTCAACGC GCCGTTGCAG GCCGTGCACG GCGACCGCCT GGTGCTGCGC
GATCAGCGCG CCCAACGCAC ACTGGGCGGC GGCAAGGTGC TCGACCCGTT CGCCCCAAGC
CGCCAACGCC GCAGCGATGC CCGTCTGCAG CAGTTGCAGG TGCTGCGCGA TGCAGCGGAT
CTGGAGCAGG CACTGCCAGC ACTGCTCGCC AGTGCACCGG GCGGCATTAG CCCGCAGCGA
CTCGAGCGGC AGTTCAACCG CCTGCGGGAA ACCTGGCAGT TACCGGATGA TGTGCGGGTG
GTGGCCACCC GGCAGGGCCA ACTGCTGTTC GCCAACGCCC AATGGCAGGC GCTCAAGCAG
CAGGTTCTGG AACAGCTGGC GCGCTTTCAC GAGCAAGAGC CCGACCAGCT CGGCCCGGAC
CGCGATCGCC TGCGGCGCTT TGTAGCCTTG CCCCTGGAAC GGCCGGCTTT CGTCAGCCTG
CTGGATGAAC TGCTCGACGA CAGCGCCATC GCCAGCAGCG GGCCATGGCT GCATCTGCCC
GACCACAAGG TGCAGTTGAG CGAAGCCGAC AGTGCATTGT GGGCACGTCT GCAGCCGAAG
TTGATCGCAG GGCAATACGA CCCACCTTGG GTCAGGACGC TGGCGGGTGA GGAGAACCGT
GCCGAAGCCG ATGTGCGCCT GTTACTGCGC AAGTTGGCCC GGCTGGGCCT GGTGCATCAA
GTGGTGCGCG ACCTGTTCTA TCCAGAGGCG ACGCTGCAGC GCATGGCAGC GTTGATGCTG
GGGCAGGCCA GCGAAACGCA GATAGTGCAG GTTGCCGCGT TTCGCGATAT GTTGGGCATC
GGTCGCAAGC GCAGTGTGCA GATTCTGGAA TACTTCGACC GCATCGGTCT GACCCGGAGG
GTGGCCGACC AGCGTCACAT CCGCGCCGAC AGCGCCCTGG CCCAACAGCA GGCCAGGCAC
TGA
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| Protein sequence | MIVGTAGHID HGKTALLLAL TGQAGDQRQE ERARGMTIDL GYRYAALSEG APLTGFIDVP
GHERFIHNML AGAHGIDLVL LVVAADDGVM PQTREHLAII ELLGIPQALV AISKCDRVEP
SRLAEVQMQV SELLAPGPYA GARQFPLSSI SGEGVDALRQ ALLEAEAGTR QRSVVGGFRL
AVDRAFAVTG AGVVVTGTAL AGRVSAGDTL LLGKAGKVVR VRGLHAQNQA ALVAEAGQRV
ALNIAAERLA VEQVHRGDWL VPEWLHAPSV RVDIELNLLP GEKRAFEHFS AVHVHLGTQD
VTARVALLEG ESLAAGQRMF AQLLLNAPLQ AVHGDRLVLR DQRAQRTLGG GKVLDPFAPS
RQRRSDARLQ QLQVLRDAAD LEQALPALLA SAPGGISPQR LERQFNRLRE TWQLPDDVRV
VATRQGQLLF ANAQWQALKQ QVLEQLARFH EQEPDQLGPD RDRLRRFVAL PLERPAFVSL
LDELLDDSAI ASSGPWLHLP DHKVQLSEAD SALWARLQPK LIAGQYDPPW VRTLAGEENR
AEADVRLLLR KLARLGLVHQ VVRDLFYPEA TLQRMAALML GQASETQIVQ VAAFRDMLGI
GRKRSVQILE YFDRIGLTRR VADQRHIRAD SALAQQQARH
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