Gene Pcar_0832 details

Gene Information

• Locus tag: Pcar_0832
• Symbol: selB
• ID: 3723271
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: +
• Start bp: 981819
• End bp: 983732
• Gene Length: 1914 bp
• Protein Length: 637 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637750427
• Product: selenocysteine-specific translation elongation factor
• Protein accession: YP_356259
• Protein GI: 77918444
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG3276] Selenocysteine-specific translation elongation factor
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR00475] selenocysteine-specific elongation factor SelB; [TIGR00485] translation elongation factor TU

Plasmid Coverage information

• Num covering plasmid clones: 57
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACACC TTATTCTTGG TACTGCCGGT CATATCGATC ATGGCAAAAC TTCCCTGGTC 
AGGGCTCTGA CCGGTACCAA CACGGACCGT TTAAAAGAAG AAAAGGAACG CGGCATCACC 
ATCGAGTTGG GCTTCGCGCA TCTGGAACTG GGGGACGATA TCCAGTTCGG TATCGTGGAC 
GTTCCGGGGC ATGAACGGTT TGTCCGCACC ATGGTGGCGG GAGTCGGCGG CATGGACCTG 
GTCATGCTGG TCATCGCGGC CGACGAAGGG GTGATGCCCC AGACGCGGGA ACATCTGGAA 
ATCTGCCAGT TACTCGGGGT CAGAAAAGGG CTGGTAGCCC TGACCAAATG CGATATGGTG 
GATGAGGAGT GGCGGCAGCT CGTCATTGAA GATGTTCAAA ATTACCTGGT CGGAAGTTTT 
CTGGAAGAGG CGCCGATTGT CCAGGTCTCG GCCAAAACCG GCGCCGGATT GGAGGATCTT 
CAGTCGCAGC TAGCGCAACT GGCCTCCGAG GTGCACGAAA AATCCGATGA CGGTTGCTTC 
CGCCTGCCCG TGGACCGCGT CTTTACCGTT GCCGGCTTCG GCACGGTGGT CACCGGTACG 
CTTCTTTCCG GTAAGATTGC CACCGGGGAC GAGGTGGAGA TTTTACCGGG CGGCCTGACT 
TCGCGGGTGC GCAGCGTTCA GAGCCACGGC ACAAAGGCCG AGTACGGTTC GGCGGGGCAA 
CGCCTGGCGG TCAACCTGCA GGGCATCGAT CATGCCGATA TATCCCGCGG AGATGTAGTG 
GTGCCGCGCG ATGTTTATAA TGTTACCCGT ACCGTCGATG TGCGGATCGA TTATCTGGCT 
TCGGCGACGC GGGAGCTGAA GCACCGCGCC ACGGTACGGC TGCATTCCGC CACTTATGAG 
GTTCCGGCGC AGGTCATTCT GCTCGATCGC GATACCCTTG CTCCCGGAGA CTCCGCTTTT 
GTGCAGTTGC GTCTGAAAAG CCCGGTCCTG CTGTTGCCCG GTGATTATTT TATCGTACGC 
AGCTATTCCC CCCAGATTAC CATCGGTGGC GGGGTGGTCA TCGACCCCGC TCCGCCGCGG 
CGACGTCGTC GTTCCGCCCA GGCCCTGGAA CTGCTGGATG CTCTTAACGA AGGGCAGGAT 
GCCGATAAGC TGTCGTTGCT GATTCAAGAG AGCCTGCTTT CGGGTTTGTC TCTGGATGAA 
CTCGTCGTTC GCAGCGGTCT GTCTGCCAAA AGTGTCGACT CCGCCCTGGC GGGATTGCTC 
TCCCAGGGGG GGGTGGTCCA GGTTGTGCGC AAACCACGGA TTTTTTTGGC CAAACAAGCC 
TTTGAAACGC TCAAGGGGCT GCTGTTGGAG GGGCTGGAAG AGTACATCCG GGAAAATCCC 
CTGAAAGAGG GCATCGGCAA GGAAGAGCTT AAAGCCCATA TCCCGAAACG AAGCGATAGC 
CGTTTCTATG CGGTGGTGTT GGCTGCTCTG GAGAAGGAAG GCAAGGTGCT TGTCGAGAAG 
GATCTGGTGA AGATCCCGGG GCACAGGGCT TCGGTGGTGG TGGGCCAGGC GGGGCTGTTG 
GCTCAGCTTG AACATGCTTT GCAGGAGGGT GGCACGGAAC CGCCCAGCAT CAAGGAAATG 
TGTGCGGCGG TCAGCTGCGC CGAGAGGGAG GTCCTCGGTC ATCTGGATCT GCTGGTTCGG 
GAAGAGCGGG CGGTCAAAAT AAAGGCCGAT CTGTTTTATG CCCCCGAGCC TTTGATGACG 
CTGCGGGAAC AGTTGCTGGC CTTTCTTCGG GAAAAGCAGG AGATCACGCC GCCGGAATTT 
CGCCAGTTGA CCGGCCTCTC ACGCAAATAC ATGATTCCGT TGCTGGAATA TTTTGACCAG 
GAAAAGATCA CCATCCGGGT TGGCGACAAG CGGATGTTGA GAAAGAGGAA TTAA 

 

Protein sequence

MKHLILGTAG HIDHGKTSLV RALTGTNTDR LKEEKERGIT IELGFAHLEL GDDIQFGIVD 
VPGHERFVRT MVAGVGGMDL VMLVIAADEG VMPQTREHLE ICQLLGVRKG LVALTKCDMV 
DEEWRQLVIE DVQNYLVGSF LEEAPIVQVS AKTGAGLEDL QSQLAQLASE VHEKSDDGCF 
RLPVDRVFTV AGFGTVVTGT LLSGKIATGD EVEILPGGLT SRVRSVQSHG TKAEYGSAGQ 
RLAVNLQGID HADISRGDVV VPRDVYNVTR TVDVRIDYLA SATRELKHRA TVRLHSATYE 
VPAQVILLDR DTLAPGDSAF VQLRLKSPVL LLPGDYFIVR SYSPQITIGG GVVIDPAPPR 
RRRRSAQALE LLDALNEGQD ADKLSLLIQE SLLSGLSLDE LVVRSGLSAK SVDSALAGLL 
SQGGVVQVVR KPRIFLAKQA FETLKGLLLE GLEEYIRENP LKEGIGKEEL KAHIPKRSDS 
RFYAVVLAAL EKEGKVLVEK DLVKIPGHRA SVVVGQAGLL AQLEHALQEG GTEPPSIKEM 
CAAVSCAERE VLGHLDLLVR EERAVKIKAD LFYAPEPLMT LREQLLAFLR EKQEITPPEF 
RQLTGLSRKY MIPLLEYFDQ EKITIRVGDK RMLRKRN