Gene EcSMS35_3918 details

Gene Information

• Locus tag: EcSMS35_3918
• Symbol: selB
• ID: 6144997
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli SMS-3-5
• Kingdom: Bacteria
• Replicon accession: NC_010498
• Strand: -
• Start bp: 3989693
• End bp: 3991537
• Gene Length: 1845 bp
• Protein Length: 614 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 641618744
• Product: selenocysteinyl-tRNA-specific translation factor
• Protein accession: YP_001745883
• Protein GI: 170681383
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG3276] Selenocysteine-specific translation elongation factor
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR00475] selenocysteine-specific elongation factor SelB; [TIGR00485] translation elongation factor TU

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 45
• Fosmid unclonability p-value: 0.696319
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATTATTG CGACTGCCGG ACACGTTGAC CACGGCAAAA CAACCTTGTT GCAGGCGATT 
ACGGGCGTAA ATGCCGACCG TCTGCCGGAA GAAAAAAAGC GCGGCATGAC CATCGATCTC 
GGCTATGCCT ACTGGCCGCA GCCGGATGGT CGCGTGCCTG GTTTTATCGA CGTACCCGGT 
CATGAAAAGT TTCTTTCCAA CATGCTGGCG GGCGTTGGTG GTATTGATCA CGCGCTGTTG 
GTGGTGGCGT GCGATGACGG CGTGATGGCA CAGACCCGTG AGCATCTGGC GATTTTGCAG 
CTGACCGGTA ACCCGATGCT GACAGTGGCG CTGACCAAAG CCGATCGCGT GGACGAAGCG 
CGTGTTGATG AGGTTGAACG CCAGGTAAAG GAGGTGCTGC GGGAATACGG TTTTGCTGAG 
GCAAAACTGT TTATCACCGC AGCAACCGAA GGTCGGGGAA TTGATGCCCT GCGCGAGCAT 
CTGCTTCAGT TACCAGAACG CGAACACGCC AGCCAACATA GTTTCCGCCT CGCGATCGAC 
CGCGCATTTA CCGTAAAAGG TGCCGGGCTG GTCGTTACCG GTACGGCGTT AAGCGGGGAA 
GTGAAGGTAG GCGATTCAAT CTGGCTGACT GGTGTAAATA AACCGATGCG CGTGCGTGCG 
CTACATGCGC AAAATCAGCC AACAGAAACT GCCCATGCCG GGCAGCGTAT CGCGCTTAAC 
ATCGCGGGTG ATGCGGAAAA AGAGCAGATT AACCGTGGCG ACTGGCTGCT TGCCGATGTG 
CCGCCGGAGC CGTTCACACG GGTGATTGTC GAGCTTCAAA CCCATACACC GCTGACCCAG 
TGGCAGCCGC TGCATATTCA CCACGCCGCC AGCCACGTTA CGGGACGCGT TTCGCTGCTG 
GAAGATAACC TTGCCGAGCT GGTGTTCGAC ACGCCGCTGT GGCTGGCGGA TAACGATCGC 
ATAGTGCTGC GCGATATCTC GGCCCGCAAC ACGCTGGCGG GGGCGCGTGT GGTGATGCTT 
AACCCGCCGC GTCGCGGTAA GCGTAAGCCG GAATATCTGC AATGGCTGGC GTCTCTTGCA 
CGGGCGCAGA GCGATGCCGA TGCGTTATCT GTTCATCTGG AACGCGGCGC GGTTAACCTT 
GCTGATTTCG CCTGGGCGCG CCAGCTCAAC GGCGAAGGGA TGCGCGAACT GCTGCAACAG 
CCTGGCTATA TTCAGGCTGG TTATAGCTTG TTGAATGCGC CGGTTGCCGC CCGCTGGCAG 
CGGAAAATTC TCGACACATT AGCGACTTAT CATGAGCAAC ATCGCGATGA ACCTGGTCCT 
GGGCGCGAAC GTCTGCGACG TATGGCGTTG CCAATGGAAG ATGAAGCGCT GGTACTGTTG 
CTGATTGAAA AGATGCGCGA AAGCGGCGAC ATCCTCAGTC ATCACGGCTG GCTGCATCTG 
CCGGATCACA AAGCGGGCTT CAGCGAAGAG CAGCAGGCCA TCTGGCAAAA AGCAGAGCCA 
CTGTTTGGTG ACGAACCGTG GTGGGTGCGA GACCTGGCAA AAGAGACGGG AACCGACGAG 
CAGGCAATGC GCCTGACTCT ACGCCAGGCG GCGCAGCAGG GGATAATTAC CGCGATCGTT 
AAAGATCGTT ATTACCGTAA CGATCGGATT GTCGAGTTTG CTAATATGAT CCGCGATCTC 
GATCAGGAGT GTGGTTCAAC CTGCGCGGCG GATTTCCGCG ATCGCTTAGG CGTAGGCCGA 
AAGCTGGCAA TTCAGATTCT GGAATATTTT GACCGCATTG GCTTTACGCG TCGTCGTGGA 
AATGATCATT TATTACGCGA CGCATTATTA TTTCCGGAAA AATAA 

 

Protein sequence

MIIATAGHVD HGKTTLLQAI TGVNADRLPE EKKRGMTIDL GYAYWPQPDG RVPGFIDVPG 
HEKFLSNMLA GVGGIDHALL VVACDDGVMA QTREHLAILQ LTGNPMLTVA LTKADRVDEA 
RVDEVERQVK EVLREYGFAE AKLFITAATE GRGIDALREH LLQLPEREHA SQHSFRLAID 
RAFTVKGAGL VVTGTALSGE VKVGDSIWLT GVNKPMRVRA LHAQNQPTET AHAGQRIALN 
IAGDAEKEQI NRGDWLLADV PPEPFTRVIV ELQTHTPLTQ WQPLHIHHAA SHVTGRVSLL 
EDNLAELVFD TPLWLADNDR IVLRDISARN TLAGARVVML NPPRRGKRKP EYLQWLASLA 
RAQSDADALS VHLERGAVNL ADFAWARQLN GEGMRELLQQ PGYIQAGYSL LNAPVAARWQ 
RKILDTLATY HEQHRDEPGP GRERLRRMAL PMEDEALVLL LIEKMRESGD ILSHHGWLHL 
PDHKAGFSEE QQAIWQKAEP LFGDEPWWVR DLAKETGTDE QAMRLTLRQA AQQGIITAIV 
KDRYYRNDRI VEFANMIRDL DQECGSTCAA DFRDRLGVGR KLAIQILEYF DRIGFTRRRG 
NDHLLRDALL FPEK