Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcE24377A_4088 |
Symbol | selB |
ID | 5589628 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli E24377A |
Kingdom | Bacteria |
Replicon accession | NC_009801 |
Strand | - |
Start bp | 4070638 |
End bp | 4072482 |
Gene Length | 1845 bp |
Protein Length | 614 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640927707 |
Product | selenocysteinyl-tRNA-specific translation factor |
Protein accession | YP_001465067 |
Protein GI | 157155659 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00475] selenocysteine-specific elongation factor SelB [TIGR00485] translation elongation factor TU |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATTATTG CGACTGCCGG ACACGTTGAC CACGGCAAAA CAACCTTATT GCAGGCGATT ACTGGCGTAA ATGCTGACCG TCTGCCGGAA GAAAAAAAGC GCGGCATGAC CATCGATCTC GGCTATGCCT ACTGGCCGCA GCCGGATGGT CGCGTGCCTG GTTTTATCGA CGTACCCGGT CATGAAAAGT TTCTTTCCAA CATGCTGGCG GGCGTTGGTG GTATCGATCA CGCGCTGTTG GTGGTGGCGT GCGATGACGG CGTGATGGCA CAGACCCGTG AGCATCTGGC GATTTTGCAG CTGACCGGTA ACCCGATGCT GACAGTGGCG CTGACCAAAG CCGATCGCGT GGACGAAGCG CGTGTTAATG AGGTTGAACG CCAGGTAAAG GAGGTGCTGC GGGAATACGG TTTTGCTGAG GCAAAACTGT TTATCACCGC AGCAACCGAA GGTCGGGGAA TTGATGCCCT GCGCGAGCAT CTGCTTCAGT TGCCGGAACG CGAGCACGCC AGCCAACATA GTTTCCGCCT CGCGATTGAC CGCGCATTTA CCGTAAAAGG TGCCGGGCTG GTCGTCACCG GTACGGCGTT AAGCGGGGAA GTGAAGGTAG GCGATTCACT CTGGCTGACT GGTGTAAATA AACCGATGCG TGTACGTGCG CTGCATGCGC AAAACCAGCC AACAGAAACC GCCAATGCCG GGCAGCGTAT CGCGCTTAAC ATCGCGGGTG ATGCGGAAAA AGAGCAGATT AACCGTGGCG ACTGGCTGCT TGCCGATGTG CCGCCAGAGC CGTTCACGCG GGTGATTGTC GAGCTTCAAA CCCATACGCC GCTGACCCAG TGGCAGCCGC TGCATATTCA CCACGCCGCC AGCCACGTTA CGGGACGCGT TTCGCTGCTG GAAGATAACC TTGCCGAGCT GGTGTTCGAC ACGCCGCTGT GGCTGGCGGA TAACGATCGC TTAGTGCTGC GCGATATCTC GGCCCGCAAC ACGCTGGCGG GGGCGCGTGT GGTGATGCTT AACCCGCCGC GTCGCGGTAA ACGTAAGCCG GAATATCTGC AATGGCTGGC GTCTCTTGCA CGGGCGCAGA GCGATGCCGA TGCGTTATCT GTTCATCTGG AACGCGGCGC GGTTAACCTT GCGGATTTCG CCTGGGCACG GCAGCTCAAC GGCGAAGGGA TGCGCGAATT GCTGCAACAG CCTGGCTATA TTCAGGCTGG TTATAGCTTG TTGAATGCGC CGGTTGCCGC TCGCTGGCAA CGGAAAATTC TCGACACATT AGCGACTTAT CATGAGCAAC ATCGCGATGA ACCTGGGCCT GGGCGCGAAC GTCTGCGACG TATGGCGTTG CCAATGGAAG ATGAAGCGCT AGTACTGTTG CTGATTGAAA AGATGCGCGA AAGCGGCGAC ATCCTCAGTC ATCACGGTTG GCTGCATCTG CCGGATCACA AAGCGGGCTT CAGCGAAGAG CAGCAGGCCA TCTGGCAAAA AGCAGAGCCG CTGTTTGGTG ACGAGCCGTG GTGGGTGCGT GATCTGGCAA AAGAGACGGG TACCGACGAG CAGGCAATGC GCCTGACGCT ACGCCAGGCG GCGCAGCAAG GAATAATTAC CGCGATCGTC AAAGATCGTT ATTACCGTAA CGATCGGATT GTCGAATTTG CCAATATGAT CCGCGATCTC GATCAGGAGT GTGGTTCAAC CTGCGCGGCG GATTTCCGCG ATCGCTTAGG CGTAGGCCGA AAGCTGGCAA TTCAGATTCT GGAATATTTT GACCGCATTG GCTTTACGCG TCGTCGTGGA AATGATCATT TATTGCGCGA CGCATTATTA TTTCCGGAAA AATAA
|
Protein sequence | MIIATAGHVD HGKTTLLQAI TGVNADRLPE EKKRGMTIDL GYAYWPQPDG RVPGFIDVPG HEKFLSNMLA GVGGIDHALL VVACDDGVMA QTREHLAILQ LTGNPMLTVA LTKADRVDEA RVNEVERQVK EVLREYGFAE AKLFITAATE GRGIDALREH LLQLPEREHA SQHSFRLAID RAFTVKGAGL VVTGTALSGE VKVGDSLWLT GVNKPMRVRA LHAQNQPTET ANAGQRIALN IAGDAEKEQI NRGDWLLADV PPEPFTRVIV ELQTHTPLTQ WQPLHIHHAA SHVTGRVSLL EDNLAELVFD TPLWLADNDR LVLRDISARN TLAGARVVML NPPRRGKRKP EYLQWLASLA RAQSDADALS VHLERGAVNL ADFAWARQLN GEGMRELLQQ PGYIQAGYSL LNAPVAARWQ RKILDTLATY HEQHRDEPGP GRERLRRMAL PMEDEALVLL LIEKMRESGD ILSHHGWLHL PDHKAGFSEE QQAIWQKAEP LFGDEPWWVR DLAKETGTDE QAMRLTLRQA AQQGIITAIV KDRYYRNDRI VEFANMIRDL DQECGSTCAA DFRDRLGVGR KLAIQILEYF DRIGFTRRRG NDHLLRDALL FPEK
|
| |