| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_1123 |
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| Symbol | |
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| ID | 5733015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009972 |
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| Strand | + |
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| Start bp | 1286736 |
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| End bp | 1288619 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641278262 |
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| Product | selenocysteine-specific translation elongation factor |
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| Protein accession | YP_001543899 |
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| Protein GI | 159897652 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAATTA CGCTCGGCAC TGCTGGCCAT GTTGATCATG GCAAATCAAG CCTCGTTCAA
GCCCTGACAG GCATCAACCC CGATCGTTGG GAAGAAGAAC AACGCCGCCA AATGACGCTT
GATCTGGGCT TTGCCTGGTT CAGCACGCCC GCTGGTCATT CGGTCAATCT GGTTGATGTG
CCAGGCCATG AACGGCTAAT CAAAAATATG TTGGCTGGGG TAACTGGTTT TGATGGAGTG
TTGTTCGTCG TTGCCGCCGA TGAAGGCATG CAGCCACAAA GCCATGAACA TTTACAAATT
CTCAATCAAT TGGGCATTGA GCATGGGCTG ATCATCATTA GCAAAATTGA TCTGGTTGAT
GCTGAATGGC TTGAATTTAT CAGCGGCGAC ATTCAGGCGC AATTTGCCGC TACCAGCCTG
GCCAATGCGC CAATCGTGCC AGTTTCGGCG CGAACTGGGG CTGGCATGGC TCAATTGCTC
CAAGCGCTTG ACCAATTAAT CAGCCAATTG CCAGCCCGAA CAATCCAGAA ACAGCATCCG
CACTTGCCGA TCGATCGGGT GTTTAGCATC GATGGCTTTG GCACAGTCGT CACCGGAACG
CTGCGCGACG GCAATTTAAG CGTGGGCATG GAAATCGAAA TTTTGCCGCA ACAACTGCGT
GGGCGAATTC GCGGCTTGCA ATCGCAGCAA ATCAGTTACG TCAGCGTGCA GGCAGGCATG
CGCGTGGCGG TTAATCTGAG CGGCATCGAA CGCCAAAGTC TCAAGCGTGG CGATGTATTG
ACATTGCCTC AAACTTTTGA GCCAACCAAC TTGCTTGATG TGTTGATTGA AACCACCACC
GCTGCCCCAA GCTTGAGCCA TAATCAGCCT CTACAACTCT ATCTCGGGAG CGCCGAACTG
AGTTGCACCC TCGCCTTGCT CGATTGCGAC ACGTTGCCAG CCAAGCAGCA AGCCTTTGGC
CAATTGCGTT TACAACACCC AACCATTGCC CAACGCGGCG ATCGTGGAAT TTTACGGCGT
GCCTCGCCAG CCGCCACAGT GGCGGGAATA CGGGTGCTCG ATGCGCATCC ACAACGGCAT
CGGCGTATGC GCCCAGCTGT GATTGAACAG TTGCAACAAC TAGCCAATGG CTTGCCCCAT
GAAATTCTGT TACAGCACAT TCAACAGCAA TGTTTAACCT GGCAGGAGCT GCAACAACGC
AGCGGCTTCG ATTCGCCAAC TGCCCTAGCC GCGCTCAATA TCGGCTGCAA CAACGGCTTA
ATCAGCATCG TCTCAGCAAC AATGGCGACA CTCACGGCCA GCAGTTTAAT TACGAGCACA
GCTTATTGGA GCCAATTACA AGCCAATTTG CGCCAGATTC TGGCCGAATA TCATGCCATG
TGGCCGTTGC GCACAGCTAT GCCCCGCGAG GAATTACGCA AACGGATGGG TTTAGCAGCC
AACAGCTTTA ATCAAATATT AAATGCTTTA GCTGCACAAC CATGGCTAAG TGTTGAAGCT
ACGCAGATTA AGCTGACTGA ACATCAAGCC CAACCTAGCC CCGGTCAACA AGCCCAAATC
CAAGCCTTGT TGGGATTGTG GCAGAGCAAC CCAGCCCTAC CGCCAAGCCG TGAGCAATGG
CCCAAGCTTG ATCCAGAACT ATGGCGCTAT CTACTACAAA CTGAGCAATT GATTCAGATT
GGCGCAGAGG TCTATTTCTT GCCGAAGCAA TACCACCAGA TGCATACTTG GGTGCTAGAG
CAACTTGCTG CTGGCCAAAG CATCAGTCTT GCCCAAGCCC GTGATGCTTG GCAAACCAGC
CGTAAATATG CCCAAGCCAT GCTCGAACAC TGCGATCAAC TGCGCATTAC CCGCCGCGTC
GGCGATCTAC GGGTAGCCTA TTGA
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| Protein sequence | MAITLGTAGH VDHGKSSLVQ ALTGINPDRW EEEQRRQMTL DLGFAWFSTP AGHSVNLVDV
PGHERLIKNM LAGVTGFDGV LFVVAADEGM QPQSHEHLQI LNQLGIEHGL IIISKIDLVD
AEWLEFISGD IQAQFAATSL ANAPIVPVSA RTGAGMAQLL QALDQLISQL PARTIQKQHP
HLPIDRVFSI DGFGTVVTGT LRDGNLSVGM EIEILPQQLR GRIRGLQSQQ ISYVSVQAGM
RVAVNLSGIE RQSLKRGDVL TLPQTFEPTN LLDVLIETTT AAPSLSHNQP LQLYLGSAEL
SCTLALLDCD TLPAKQQAFG QLRLQHPTIA QRGDRGILRR ASPAATVAGI RVLDAHPQRH
RRMRPAVIEQ LQQLANGLPH EILLQHIQQQ CLTWQELQQR SGFDSPTALA ALNIGCNNGL
ISIVSATMAT LTASSLITST AYWSQLQANL RQILAEYHAM WPLRTAMPRE ELRKRMGLAA
NSFNQILNAL AAQPWLSVEA TQIKLTEHQA QPSPGQQAQI QALLGLWQSN PALPPSREQW
PKLDPELWRY LLQTEQLIQI GAEVYFLPKQ YHQMHTWVLE QLAAGQSISL AQARDAWQTS
RKYAQAMLEH CDQLRITRRV GDLRVAY
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