| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0494 |
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| Symbol | selB |
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| ID | 1044266 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 582133 |
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| End bp | 584055 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637143879 |
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| Product | selenocysteine-specific translation elongation factor |
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| Protein accession | NP_742659 |
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| Protein GI | 26987234 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.190998 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCGTTG GTACCGCTGG CCACATCGAC CACGGCAAGA CCGCACTGCT GCTGGCGCTG
ACCGGCCAGG CCGGCGACCA GCGGCAAGAA GAGCGCGCCC GCGGCATGAC CATCGACCTT
GGCTACCGCT ATGCGGCGCT GAGCGAAGGC GCGCCGCTGA CCGGCTTCAT CGATGTGCCG
GGCCACGAGC GCTTTATCCA CAACATGCTG GCCGGCGCCC ATGGCATCGA CCTGGTGCTG
TTGGTAGTGG CGGCCGACGA CGGGGTCATG CCGCAGACCC GTGAGCACCT GGCGATCATC
GAGCTGCTGG GCATTCCCCA GGCCTTGGTG GCGATCAGCA AATGCGACCG GGTCGAGCCG
TCGCGTCTGG CCGAGGTGCA GATGCAAGTC AGTGAATTGC TGGCGCCTGG GCCCTATGCC
GGTGCGCGGC AGTTTCCGCT GTCGAGCATC AGCGGGGAGG GCGTGGACGC GTTGCGTCAG
GCCCTGCTGG AGGCCGAAGC AGGTACACGG CAGCGTAGTG TCGTCGGTGG TTTTCGCCTG
GCCGTCGACC GTGCGTTTGC GGTTACCGGC GCCGGTGTGG TGGTCACCGG CACGGCACTG
GCCGGGCGGG TCAGTGCGGG TGATACGTTG TTGCTGGGCA AGGCCGGCAA GGTGGTGCGC
GTGCGTGGTC TGCATGCGCA GAACCAGGCC GCGTTGGTGG CAGAAGCAGG CCAACGGGTG
GCGCTGAACA TCGCTGCCGA GCGCCTGGCC GTGGAGCAGG TGCACCGGGG CGACTGGCTG
GTGCCCGAAT GGTTGCATGC GCCCAGTGTT CGGGTGGATA TCGAGCTGTA CCTGTTACCG
GACGAGAAGC GTGCTTTCGA ACATTTCAGC GCCGTGCATG TGCACCTCGG CACCCAGGAT
GTAACGGCCC GGGTCGCCTT GCTCGAAGGC GAAAGCCTGG CTGCCGGCCA ACGCATGTTT
GCCCAGTTGT TGCTCAACGC GCCGTTGCAG GCCGTGCACG GCGACCGCCT GGTGCTGCGC
GATCAGCGCG CCCAACGCAC ACTGGGCGGC GGCAAGGTGC TCGACCCGTT CGCCCCAAGC
CGCCAACGCC GCAGCGATGC CCGTCTGCAG CAGTTGCAGG TGCTGCGCGA TGCAGCGGAT
CTGGAGCAGG CACTGCCAGC ACTGCTCGCC AGTGCACCGG GCGGCATTAG CCCGCAGCGA
CTCGAGCGGC AGTTCAACCG CCTGCGGGAA ACCTGGCAGT TACCGGATGA TGTGCGGGTG
GTGGCCACCC GGCAGGGCCA ACTGCTGTTC GCCAACGCTC AATGGCAGGC GCTCAAGCAG
CAGGTCCTGG AGCAGTTGGC GCGCTTTCAC GAGCAAGAGC CCGACCAGCT TGGCCCTGAC
CGTGATCGCT TGCGGCGCTT TGTAGCCTTG CCTCTGGAAC GGCCGGCATT CGTCAGTTTG
CTGGATGAAC TGCTCGACGA CAGCGCCATC GCCAGCAGCG GGCCATGGCT GCATCTGCCC
GATCACAAGG TACAGTTGAG CGAAGCCGAC AGTGCATTGT GGGCACGTCT GCAGCCGAAG
TTGATCGCAG GGCAATTTGA CCCACCCTGG GTCAGGACGC TGGCGAGTGA GGAGAACTGT
GCCGAAGCCG ATGTGCGCCT GTTACTGCGC AAGTTGGCCC GGCTGGGCCT GGTGCATCAG
GTGGTGCGCG ACTTGTTCTA CCCCGAGGCG ACGCTGCAGC GCATGGCAGC GTTGATGCTG
GGGCAGGCCA GCGAAACGCA GATAGTGCAG GTTGCCGCGT TTCGCGATAT GTTGGGCATC
GGTCGCAAGC GCAGTGTGCA GATTCTGGAA TACTTCGACC GCATCGGCCT GACCCGGAGG
GTGGCCGACC AGCGTCACAT CCGCGCCGAC AGCGCCCTGG CTCAACAGCA CGCCAGGCAC
TGA
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| Protein sequence | MIVGTAGHID HGKTALLLAL TGQAGDQRQE ERARGMTIDL GYRYAALSEG APLTGFIDVP
GHERFIHNML AGAHGIDLVL LVVAADDGVM PQTREHLAII ELLGIPQALV AISKCDRVEP
SRLAEVQMQV SELLAPGPYA GARQFPLSSI SGEGVDALRQ ALLEAEAGTR QRSVVGGFRL
AVDRAFAVTG AGVVVTGTAL AGRVSAGDTL LLGKAGKVVR VRGLHAQNQA ALVAEAGQRV
ALNIAAERLA VEQVHRGDWL VPEWLHAPSV RVDIELYLLP DEKRAFEHFS AVHVHLGTQD
VTARVALLEG ESLAAGQRMF AQLLLNAPLQ AVHGDRLVLR DQRAQRTLGG GKVLDPFAPS
RQRRSDARLQ QLQVLRDAAD LEQALPALLA SAPGGISPQR LERQFNRLRE TWQLPDDVRV
VATRQGQLLF ANAQWQALKQ QVLEQLARFH EQEPDQLGPD RDRLRRFVAL PLERPAFVSL
LDELLDDSAI ASSGPWLHLP DHKVQLSEAD SALWARLQPK LIAGQFDPPW VRTLASEENC
AEADVRLLLR KLARLGLVHQ VVRDLFYPEA TLQRMAALML GQASETQIVQ VAAFRDMLGI
GRKRSVQILE YFDRIGLTRR VADQRHIRAD SALAQQHARH
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