| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0549 |
|---|
| Symbol | |
|---|
| ID | 6109457 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 608710 |
|---|
| End bp | 610632 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641620305 |
|---|
| Product | selenocysteine-specific translation elongation factor |
|---|
| Protein accession | YP_001747423 |
|---|
| Protein GI | 170719735 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.177696 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCATTG GTACCGCTGG CCACATCGAC CACGGCAAGA CCGCATTGCT CCAGGCCCTG
ACCGGGCAGG CCGGCGACCA TCGCCAGGAA GAACGCGAGC GCGGCATGAC CATCGATCTG
GGCTATCGCT ATGCCGCCCT GGCTGAAGGC GCGCCATTGA CGGGCTTCAT CGATGTGCCC
GGCCACGAGC GTTTCATCCA CAACATGCTT GCTGGCGCCC ATGGTATCGA TCTGGTGTTG
CTGGTGGTGG CTGCTGATGA CGGCGTCATG CCGCAGACCC GTGAGCACCT GGCGATCATT
GAGTTGTTGG GCATTCCCCT GGCACTGGTA GCAATAAGCA AGTGCGACCG GGTCGCGCCG
GTGCGCGTGG CCGAAGTGCA GGTGCAGATT GCACAGTTGC TGGCGCCCGG GCCTTATGCC
GGGGCAGCGC AGTTCCCGCT GTCGAGTGTT ACCGGCGAGG GGGTCGAGGC GCTGCGTCAT
GCTTTGCTCG CGGCGGGCGA GGGCTTGAAG CAGCGCAGCG TGCGTGGCGG CTTTCGGTTG
GCTATCGACC GCGCCTTCGC GGTCACCGGG GCTGGCCTGG TGGTCACGGG TACGGCGCTG
GCCGGGCGTG TCAGCGCGGG TGATACGTTA TTGCTCGGCA AGGCCGGTAA AGCAGTGCGG
GTACGCGGTC TGCATGCGCA AAACCAGGCG GCGCTGGTGG CTGAAGCGGG ACAGCGTGTG
GCGCTGAACA TTGCAGCCGA GCGCCTCGCG GTTGAGCAGG TGCGCCGTGG CGATTGGCTG
GTATCGCAAT GGCTGCACGC GCCCAGCACA CGGGTCGATA TCGAACTGCA GCTGCTCGCC
GGCGAGTCCC GCCCTTTCGA ACATTTCAGC GCCGTGCACG TACATCTGGG GACTCAGGAC
GTCACCGCAC GGGTCGCCCT GCTCGAAGGC GAGCGGCTGC CTGCTGGTCA GCGCATGTTC
GCCCAATTGT TGCTCAATGC GCCGCTGCAA GCCGTGCATG GCGACCGCCT GGTGCTGCGT
GACCAGCGTG CCCAACGCAC CCTTGGCGGC GGTACGGTGC TGGACCCGTT CGCACCGAGC
CGGCAGCGTC GCAGCGAGGC GCGCTTGTGC CAGTTGAAGG TGCTGCGTGA TGCCAAGGGC
CTGGAGCAAG CCTTGATGGC GTTGCTCGAC ACCGCGCCAG GTGGGCTCGA CCCACAGCGG
CTTGAACGCC AGTTCAACCG CTTGCGTGAG GGCTGGCAAT TACCAGCTGA CGTGCTGGTG
GTCGCAACCA GGCAAGGCCA GTTGTTATTC GCTAAAGCCC AGTGGCAGGC GCTCAAACAC
CAGGTGCGCG AACAACTGGC GTTGTTCCAC GAGCAGGAAC CCGACCAGCT GGGCCCGGAC
CGTGACCGCC TGCGGCGCTT CGCCGCCTTG CCAGTCGAGC GTCCCGCATT CGTCAGCCTG
CTCGAGGAGA TGCTCGGCGA AGGCACTATT GCCAGCAGCG GGCCGTGGTT GCATCTGCCT
GGTCACAAGG TGCAGTTGAG CGAGGCCGAC AGTGCGCTAT GGTCGCGGCT GCAGCCGAGG
TTGCTGGAAG GGCGGTTCGA TCCGCCTTGG GTGCGGACGC TGGCCAGCGA AGAGAAATGT
GCCGAGGCGG ATGTGCGCCT GTTGTTGCGA AAGTTGGCCA GGCTTGGCGT AGTGCATCAG
GTGGTACGTG ACCTGTTCTA CCCTGAGGCG ACGCTACAGC GCATGGCAGA GCTGCTGCTT
GGGCAAGCGA ATGAAACACC GATAGTGCAG GTGGCCGCAT TTCGCGATAT GTTGGGCATC
GGTCGCAAGC GCAGTGTGCA GATTCTGGAA TACTTCGACC GTATCGGCCT GACCCGCAGG
GTTGCCGATC AGCGTCACAT CCGCGCCGAC AGCGCCCTGG CCCAGCAGCA GGCCAGGCAC
TGA
|
|---|
| Protein sequence | MIIGTAGHID HGKTALLQAL TGQAGDHRQE ERERGMTIDL GYRYAALAEG APLTGFIDVP
GHERFIHNML AGAHGIDLVL LVVAADDGVM PQTREHLAII ELLGIPLALV AISKCDRVAP
VRVAEVQVQI AQLLAPGPYA GAAQFPLSSV TGEGVEALRH ALLAAGEGLK QRSVRGGFRL
AIDRAFAVTG AGLVVTGTAL AGRVSAGDTL LLGKAGKAVR VRGLHAQNQA ALVAEAGQRV
ALNIAAERLA VEQVRRGDWL VSQWLHAPST RVDIELQLLA GESRPFEHFS AVHVHLGTQD
VTARVALLEG ERLPAGQRMF AQLLLNAPLQ AVHGDRLVLR DQRAQRTLGG GTVLDPFAPS
RQRRSEARLC QLKVLRDAKG LEQALMALLD TAPGGLDPQR LERQFNRLRE GWQLPADVLV
VATRQGQLLF AKAQWQALKH QVREQLALFH EQEPDQLGPD RDRLRRFAAL PVERPAFVSL
LEEMLGEGTI ASSGPWLHLP GHKVQLSEAD SALWSRLQPR LLEGRFDPPW VRTLASEEKC
AEADVRLLLR KLARLGVVHQ VVRDLFYPEA TLQRMAELLL GQANETPIVQ VAAFRDMLGI
GRKRSVQILE YFDRIGLTRR VADQRHIRAD SALAQQQARH
|
|---|
| |