| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0107 |
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| Symbol | |
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| ID | 4250986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 120062 |
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| End bp | 122083 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 638116649 |
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| Product | selenocysteine-specific translation elongation factor SelB |
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| Protein accession | YP_732245 |
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| Protein GI | 113968452 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
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| TIGRFAM ID | [TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTATGG TCACCGCGGG CCACGTCGAC CACGGCAAGA GCACGCTGAT CCGAGCCTTG
ACGGGGATGA ACACCGACAG GCTCCCCGAA GAAAAACGCC GTGGCATGAC TATCGATCTC
GGCTACGCCT TTATGCCTCT GCGAGATGGC ACTCGCTTAG CCTTTATCGA TGTGCCCGGC
CATGAAAAAT TCATCAATAA CATGCTGGTG GGCGTGAGCC ATGTGCGCCA CGCGCTGCTG
GTGTTGGCCT GTGACGACGG CGTGATGCCG CAAACCCGCG AGCATCTGCA AATCCTTGCG
CTTTTACCGC TCAATAGTTT GACCTTAGTG CTGACCAAGC GGGATTTGGT CGATGACCAA
ACCGCCGCCA AGTTGACCAT AGAGGGAATC GCGCTGCTTG CCGAATACGG GATTGAGGCC
AGTGGCGTAT TTGAGGTTTG CGCGAATGAT ACAGGTGATG CGGGGGTAGA AACCCTTAAA
CAACATATTT TAGAGATCGC CGAGCAGCAA TCGACCCAAG CGGAAGATGC CAGCAGCTTT
AGGATGACGC TCGATCGCGC CTTTAGCGTT AAAGGTGCGG GCTGTGTGGT CACGGGCACT
GTGATTAGCG GCAGTGTGTG TATCGGCGAT AGCCTCTACA GTTCAGGCCA AAAGGCCAAA
CTAAGGGTGC GCGGCATTCA CTGCCAAGGG ATGGAAGTCC ATCGAGCCTT AAGTGGCACT
CGGGTCGCGT TGAATCTTAC CGGTGTTGAT AACCATAGGG CGCCCGCCCG CGGTGACTGG
TTAAGCAGCC TGCCTCAGGC TGAGCTGTGC GCCAGACCCG TAGTGCAAAT TCGCAGTTTT
GAACCCTTAA CCCATTGGCA AAATGTGCAT TGTCACCACG GCGCCGACCA TACCCTGGGT
CGAGTGTCAC TACTCGATGA AGCCGATGAG CAGGGGCGTT ATCTGGCCGA AATAGTGCTC
GATAAGCCGC TGCTGCTATG TCAGGACGAC CCGATAGTGC TCAGGCATAT TGGCGGTAAG
CAAACGCTGG GTGCAGGGCG AGTGCTGGCA TTAAAAGTCC CCAATCGTAA GAAGCGTACG
CCGGAGCGTG TCAGTAAGCT ACAACAGCTG GCCAAGCTCT CCAATCCGGT GAATGTGCTG
GCGCTACTCG GCCAGAGTGA GGCGCTCAGT ATTGATGAAA TCCGTTGGCG CTGGCAGCTA
ACCGATGAAG GGCTCGCAGC CATGCTGGCG CAGGCGGGGC TGACTCGCCT CGGTGCCTAT
GGGCTATCGA CCCAGCTACT CGAGCAAGAA AAACAGCAGT TTATCGAGCT GTTACGTGAG
TATCACCAAC AGCATCCCGA CCAACTAGGG CTAGGGCGTA ATCGTCTACA ACGCATGAGC
CACAGCATAT TACCCAACGA GCTGGCCAAT AAAGTGCTCG ATAGCCTCTG CCAAGATGGA
CTGATGGTGC TGCGCGGCGC CTTGCTACAG TTGGCGGACC ACAGGATTGT CCTCGATAGC
GAGGCGCAGC AGTGCTGGCA ACGCTTGGCT CCTTGGTTGG CGCTGCAAAC CTCGCCCGTG
TGGGTGACTG AGATGGGGGA ATATCTCGAA CTCGAGCCCG CCAAACTCAG ATTGCTGTGT
TTTCAACTGG TGCAACAGGG TTTTATTACC GCTGTGGTGA AGGATAGGTA TCTGCTGAGT
GAGCAGTTGT GCCACTACGC CAATCTGGTG CGTGAACATG TGGAAACCCA TGGCAAGCTC
GAAACCGCAG AGTTTAAGGA TCTGATTGGC CTAGGCCGTA AGGTCAGTAT TCAGCTGTTG
GAGTTTTTTG ACCGCAGTGG TTTTACCCGT AGGAAGTATC GCAGTAACAG TCGGGAGATC
CGGGATGGGG AATTGTTTTA TTCCCATGAG AATTGGCGGA AGAACATAGG AGTCGAACCT
ACCCAGGACT GCTGGCAGCC CTACCCGGAT TTGAAATCCG GACGCCTCAC CGGAGACGAC
GTTCTTCCAT TCGAAGACAG ACCGATAGTA GAAAATGCTT AA
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| Protein sequence | MIMVTAGHVD HGKSTLIRAL TGMNTDRLPE EKRRGMTIDL GYAFMPLRDG TRLAFIDVPG
HEKFINNMLV GVSHVRHALL VLACDDGVMP QTREHLQILA LLPLNSLTLV LTKRDLVDDQ
TAAKLTIEGI ALLAEYGIEA SGVFEVCAND TGDAGVETLK QHILEIAEQQ STQAEDASSF
RMTLDRAFSV KGAGCVVTGT VISGSVCIGD SLYSSGQKAK LRVRGIHCQG MEVHRALSGT
RVALNLTGVD NHRAPARGDW LSSLPQAELC ARPVVQIRSF EPLTHWQNVH CHHGADHTLG
RVSLLDEADE QGRYLAEIVL DKPLLLCQDD PIVLRHIGGK QTLGAGRVLA LKVPNRKKRT
PERVSKLQQL AKLSNPVNVL ALLGQSEALS IDEIRWRWQL TDEGLAAMLA QAGLTRLGAY
GLSTQLLEQE KQQFIELLRE YHQQHPDQLG LGRNRLQRMS HSILPNELAN KVLDSLCQDG
LMVLRGALLQ LADHRIVLDS EAQQCWQRLA PWLALQTSPV WVTEMGEYLE LEPAKLRLLC
FQLVQQGFIT AVVKDRYLLS EQLCHYANLV REHVETHGKL ETAEFKDLIG LGRKVSIQLL
EFFDRSGFTR RKYRSNSREI RDGELFYSHE NWRKNIGVEP TQDCWQPYPD LKSGRLTGDD
VLPFEDRPIV ENA
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