| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_3989 |
|---|
| Symbol | |
|---|
| ID | 4453086 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | + |
|---|
| Start bp | 878086 |
|---|
| End bp | 880011 |
|---|
| Gene Length | 1926 bp |
|---|
| Protein Length | 641 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639696047 |
|---|
| Product | selenocysteine-specific translation elongation factor |
|---|
| Protein accession | YP_837618 |
|---|
| Protein GI | 116692085 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
|---|
| TIGRFAM ID | [TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGTCG GGACCGCGGG GCACATCGAC CACGGCAAGA CCACGCTCGT GCGTGCGCTG
ACGGGCGTCG ACACCGATCG CCTGAAGGAA GAGAAGGCGC GCGGCATTTC GATCGAACTC
GGCTACGCGT ATACGCCGCT CGGCAACGGC GACGTGCTCG GCCTGATCGA CGTGCCGGGC
CACGAGAAGC TGATTCATAC GATGGCCGCC GGCGCGTGCG GCATCGACTT CGCACTGCTC
GTGATCGCCG CCGACGACGG CGTGATGCCG CAGACCCGCG AGCATCTCGC GATCCTGCAA
CTGCTCGGCG TCACGCATGG CGCCGTCGCG CTGACGAAAT GCGATCGCGT CGATGCCGCG
CGCGTTGCCG AGGTGCGCGA CGAGATCGCC GTCTGGCTGC ACGACTCGAC GCTGGCCGGC
GTGCCGATCT TCGAAACGCG TGCAACGGCG GCCGACGATT CCGGCGTCGC CGCGTTGAAG
CAGCACCTGG CCGACGCGGC GATCGCGTGG CGCACGCGTC GCGACGACGG GTTGTTCCGG
CTCGCGGTCG ATCGCGTGTT TACGCTCGCC GGGCAGGGCA CCGTCGTGAC GGGTACCGCG
TTCGCGGGCC GCGTCGCGAC CGGCGACACG CTCGCGATCG TGCGCACGGG CGGCGCGGCC
CGCGTGCGCA GCATCCATGC GCAGAACCGG CCGGTCGAGG CCGGCCGCGC GGGCGAGCGT
TGCGCGCTGA ACCTGGCCGG CGTCGACAAG GCAGACATCG AGCGAGGCGA CACCGTCGCC
GATGCGCGGC TCGTCGCGAC GTCGCCGCGC CTGGACGTCG AGCTGACGTT GCTCGCGGAC
GCCGGGCTGA CGCTGACGCA CTGGGCGCCG CTGCACGTGC ATCTCGGCAC GCTGCATCGC
GTGGCCCACG TCGCGCTGCT GGACGGCGAC ACGCTCGCCG CCGGCCAGCG GATGCGCGTG
CAACTGGTAT TCGACGAGCC GGTGTTCGCG CTGCCGGGCG ACCGCTTCAT CGTCCGCAAT
CCGCAGGCGA CGCGCACCGT CGGCGGCGGC CGCGTGCTCG ATCCGTTCGG GCCGGCCCGC
AAGCGCCGTA CGCCGGCGCG CCGCGCGTGG CTCGATGCGC TCGCGGCGTG GCTCGACGAA
GGGCGCCTCG ATGCGCTGCT CGCGCAGGCG CCGCTCGGCA TGGCGCGCGC GACGCTCACG
CATCTGACGG GATTCGCACC CGATGCGCTG GCGTTGCCGG ACGATGCGCT GGCGATCGGC
CAACGCGATG CCGCGGCGAA CGAAGGCGCG GTGATTTCGC ATGCGCACTG GCGGGCCTTG
CAGACGCGGG CGGTCGACAC GCTGCGCGCG TACCACGAAC GCATGCCCGA CGAGCAGGGG
CTCGACGCCG CACGCCTGCG ACGGATGGCT GCGCCGCTCG TCGGCGATAC GCTGTGGCGC
GCGCTCGTCG ATGCGCTGGT GACGGGCGGC GAGGTCGCGC GCAGCGGGCC GTGGCTGCAT
CTGCCGTCGC ATTCGGTGAG CCTCGAGCCG CGCGAGGAAG CGCTGGCGCG GCAACTGCTG
CCGCTGATCC ACGCGGGGCG CTTCGATCCG CCGTGGGTGC GCGACCTGGC CCGCGACACG
GGTGCGGCCG AGGATGCGGT GCGCACGCTG CTGCGCAAGC TTGCGCGGCG CGGCGACGTG
CACCAGGTCG TGCGCGACCT GTTCTATCAC GCGGACATCG CGCGCGAGCT GGCGGAGCTG
GTCGCGCATC TCGCGCCGTC GCGCGGCGGC GGGCTCGATG CCGCGACGTT CCGCGACGCG
ACGGGGCTCG GTCGCAAGCG CGCGATCCAG ATTCTCGAGT TCTTCGATCG GGTTGGGTAT
ACTCGCTTCC ACCGCGATCT TCACTACCTG CGGCCTGACA GCGGTTGGGC GGGTATTCAG
GCGTAG
|
|---|
| Protein sequence | MIVGTAGHID HGKTTLVRAL TGVDTDRLKE EKARGISIEL GYAYTPLGNG DVLGLIDVPG
HEKLIHTMAA GACGIDFALL VIAADDGVMP QTREHLAILQ LLGVTHGAVA LTKCDRVDAA
RVAEVRDEIA VWLHDSTLAG VPIFETRATA ADDSGVAALK QHLADAAIAW RTRRDDGLFR
LAVDRVFTLA GQGTVVTGTA FAGRVATGDT LAIVRTGGAA RVRSIHAQNR PVEAGRAGER
CALNLAGVDK ADIERGDTVA DARLVATSPR LDVELTLLAD AGLTLTHWAP LHVHLGTLHR
VAHVALLDGD TLAAGQRMRV QLVFDEPVFA LPGDRFIVRN PQATRTVGGG RVLDPFGPAR
KRRTPARRAW LDALAAWLDE GRLDALLAQA PLGMARATLT HLTGFAPDAL ALPDDALAIG
QRDAAANEGA VISHAHWRAL QTRAVDTLRA YHERMPDEQG LDAARLRRMA APLVGDTLWR
ALVDALVTGG EVARSGPWLH LPSHSVSLEP REEALARQLL PLIHAGRFDP PWVRDLARDT
GAAEDAVRTL LRKLARRGDV HQVVRDLFYH ADIARELAEL VAHLAPSRGG GLDAATFRDA
TGLGRKRAIQ ILEFFDRVGY TRFHRDLHYL RPDSGWAGIQ A
|
|---|
| |