Gene SeD_A4067 details

Gene Information

• Locus tag: SeD_A4067
• Symbol: selB
• ID: 6873664
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
• Kingdom: Bacteria
• Replicon accession: NC_011205
• Strand: -
• Start bp: 3911094
• End bp: 3912944
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 642787016
• Product: selenocysteinyl-tRNA-specific translation factor
• Protein accession: YP_002217643
• Protein GI: 198243798
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG3276] Selenocysteine-specific translation elongation factor
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR00475] selenocysteine-specific elongation factor SelB; [TIGR00485] translation elongation factor TU

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 69
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATTATTG CAACTGCCGG ACACGTAGAC CACGGTAAAA CGACGTTGCT CCAGGCGATT 
ACCGGAGTCA ATGCCGATCG CCTGCCGGAA GAGAAAAAAC GCGGGATGAC TATCGATCTG 
GGCTACGCCT ATTGGCCGCA GCCGGATGGT CGTGTGCTGG GCTTTATCGA TGTGCCTGGA 
CATGAAAAAT TCCTCTCTAA CATGCTGGCG GGCGTAGGCG GTATTGATCA CGCTTTGCTG 
GTGGTCGCCT GTGATGACGG CGTCATGGCG CAAACGCGCG AGCATTTACA GATCCTGCAA 
CTGACGGGCA ATCTCCAGCT CACCGTCGCG CTGACCAAAG CCGATCGCGT GGATGAGGCG 
CGTATCGGTG AAGTACGTGA AGAGGTACTG GCGGCGCTCG ACAACTATGG CTTCGCCGAT 
ACCGTTTTAT TTGTCACCGC CGCCAATGAA GGACGCGGTA TTGCAGAACT TCGCGCTCAT 
TTACAGCAGC TTCCTGCACG TTCGCACGCC GCGCAGCATC GCTTCCGTCT GGCTATCGAC 
CGTGCGTTTA CGGTGAAAGG GGCGGGACTG GTGGTGACCG GAACGGCGCT GAGCGGAGAG 
GTAAACGTGG GCGATACGCT ATGGTTGACC GGCGTTAATA CGCCGATGCG CGTACGAAGT 
CTACACGCGC AAAATCAGCC TACCGACCAT GCGTATGCCG GGCAACGTAT TGCGCTCAAT 
ATTGCGGGCG ATGCGGAGAA GGAGCAGCTT AACCGCGGCG ACTGGCTGCT TTCCGATGCG 
CCGGCGGGGG AGGCTTTTTC CCGGGTGATC GTTTCTCTGG CGCTTCATGC GCCGCTTTCC 
CAATGGCAAC CGCTACATAT TCACCATGCT GCCAGCCATG TGACCGGTCG CGTCTCTTTG 
CTGGAAGGCG GGCTGGCCGA GCTGATCTTT GATACGCCGT TGTGGCTGGC CGATAATGAC 
AGACTGGTGC TGCGTGATAT TTCCGCACGT GCCACCCTTG CCGGCGCACG CGTGGTGACG 
CTTAAGGCGC CGCGTCGCGG TAAACGTAAG CCAGATTATT TGCACTGGCT TTCAACGCTT 
GCCGCCGCGC AGGACGATAG CGCGGCGTTG GCCATTCATC TGGAACGCGG CGCCGTCAAC 
CTGCCGGATT TCGGTTGGGC GCGTCAGCTT AATCCTCTCG GTATGCGTCA GCTTATTGAG 
CAACATGGTT TTATCCAGGC TGGAGACAAT TTGTTAAGCG CGCCCGTCGC CGCCCGCTGG 
CAGCGTAAGA TTCTTGATAC GCTGGCGACC TACCACGAAC AGCACCGCGA TGAACCGGGG 
CCGGGACGCG AGCGTTTACG CCGCATGGCC CTGCCGATGG AGGATGAAGC GCTGGTTCTG 
ATGCTGATCG AGCGGATGCG CGACGACGGC CTGATTCATA GCCATCACGG TTGGTTGCAT 
CTGCCGGATC ATAAAGCGGG ATTTAGCGAT GAGCAGCAGG CCGTCTGGCA AAAAGTTGAA 
CCGCTATTTG GCGATGAGCC CTGGTGGGTA CGCGATCTGG CGAAAGAGAC CGGAACGGAA 
GAACAATTGA TGCGGCTGGT GCTGCGGCAG GCGGCGCAGC AAGGCATCAT TACCGCGATC 
GTAAAAGATC GGTACTATCG TAACGATCGG ATTGTCGCTT TCGCCAATAT GATCCGCGAG 
CTGGATCAAG AGAGAGGATC AACGTGTGCG GCGGATTTTC GCGACAGGCT GAATGTAGGG 
CGGAAACTGG CCATTCAGAT CCTTGAATAT TTTGACCGGA TTGGATTTAC ACGACGTCGT 
GGGAATGATC ATTTATTACG TGATGCGTTA TTATTTCCGC AAAAAGAATG A 

 

Protein sequence

MIIATAGHVD HGKTTLLQAI TGVNADRLPE EKKRGMTIDL GYAYWPQPDG RVLGFIDVPG 
HEKFLSNMLA GVGGIDHALL VVACDDGVMA QTREHLQILQ LTGNLQLTVA LTKADRVDEA 
RIGEVREEVL AALDNYGFAD TVLFVTAANE GRGIAELRAH LQQLPARSHA AQHRFRLAID 
RAFTVKGAGL VVTGTALSGE VNVGDTLWLT GVNTPMRVRS LHAQNQPTDH AYAGQRIALN 
IAGDAEKEQL NRGDWLLSDA PAGEAFSRVI VSLALHAPLS QWQPLHIHHA ASHVTGRVSL 
LEGGLAELIF DTPLWLADND RLVLRDISAR ATLAGARVVT LKAPRRGKRK PDYLHWLSTL 
AAAQDDSAAL AIHLERGAVN LPDFGWARQL NPLGMRQLIE QHGFIQAGDN LLSAPVAARW 
QRKILDTLAT YHEQHRDEPG PGRERLRRMA LPMEDEALVL MLIERMRDDG LIHSHHGWLH 
LPDHKAGFSD EQQAVWQKVE PLFGDEPWWV RDLAKETGTE EQLMRLVLRQ AAQQGIITAI 
VKDRYYRNDR IVAFANMIRE LDQERGSTCA ADFRDRLNVG RKLAIQILEY FDRIGFTRRR 
GNDHLLRDAL LFPQKE