More than 300 homologs were found in PanDaTox collection
for query gene PputGB1_0537 on replicon NC_010322
Organism: Pseudomonas putida GB-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_0494  selenocysteine-specific translation elongation factor  93.75 
 
 
640 aa  1156    Pseudomonas putida KT2440  Bacteria  normal  0.190998  normal 
 
 
-
 
NC_009512  Pput_0528  selenocysteine-specific translation elongation factor  94.06 
 
 
640 aa  1157    Pseudomonas putida F1  Bacteria  normal  normal  0.465523 
 
 
-
 
NC_007492  Pfl01_2707  selenocysteine-specific translation elongation factor SelB  67.08 
 
 
636 aa  813    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.285696 
 
 
-
 
NC_009656  PSPA7_5526  selenocysteine-specific elongation factor  64.94 
 
 
641 aa  767    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0537  selenocysteine-specific translation elongation factor  100 
 
 
640 aa  1259    Pseudomonas putida GB-1  Bacteria  normal  0.82907  normal 
 
 
-
 
NC_008463  PA14_63530  selenocysteine-specific elongation factor  64.78 
 
 
641 aa  781    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.440984  normal 
 
 
-
 
NC_010501  PputW619_0549  selenocysteine-specific translation elongation factor  87.81 
 
 
640 aa  1090    Pseudomonas putida W619  Bacteria  normal  normal  0.177696 
 
 
-
 
NC_007952  Bxe_B2548  selenocysteine-specific translation elongation factor SelB  48.5 
 
 
637 aa  544  1e-153  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.88579 
 
 
-
 
NC_010676  Bphyt_6555  selenocysteine-specific translation elongation factor  48.5 
 
 
637 aa  541  9.999999999999999e-153  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0281066  hitchhiker  0.00125424 
 
 
-
 
NC_010086  Bmul_4592  selenocysteine-specific translation elongation factor  48.3 
 
 
641 aa  536  1e-151  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.251602  normal 
 
 
-
 
NC_007650  BTH_II0712  selenocysteine-specific translation elongation factor  48.75 
 
 
641 aa  534  1e-150  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3485  selenocysteine-specific translation elongation factor  47.65 
 
 
643 aa  529  1e-149  Delftia acidovorans SPH-1  Bacteria  normal  0.035122  normal 
 
 
-
 
NC_010515  Bcenmc03_3539  selenocysteine-specific translation elongation factor  47.83 
 
 
641 aa  531  1e-149  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.791284  normal 
 
 
-
 
NC_008061  Bcen_4377  selenocysteine-specific translation elongation factor  47.83 
 
 
641 aa  531  1e-149  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.574205  n/a   
 
 
-
 
NC_008543  Bcen2424_3989  selenocysteine-specific translation elongation factor  47.83 
 
 
641 aa  531  1e-149  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B2095  selenocysteine-specific translation elongation factor SelB  47.91 
 
 
641 aa  526  1e-148  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3884  selenocysteine-specific translation elongation factor  47.21 
 
 
641 aa  520  1e-146  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0882754  normal 
 
 
-
 
NC_006349  BMAA1678  selenocysteine-specific translation elongation factor  48.44 
 
 
641 aa  518  1.0000000000000001e-145  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0725  selenocysteine-specific translation elongation factor  48.28 
 
 
641 aa  518  1.0000000000000001e-145  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1697  translation elongation factor, selenocysteine-specific  48.44 
 
 
651 aa  518  1.0000000000000001e-145  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2254  translation elongation factor, selenocysteine-specific  48.28 
 
 
651 aa  518  1.0000000000000001e-145  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0142669  n/a   
 
 
-
 
NC_010623  Bphy_4523  selenocysteine-specific translation elongation factor  46.2 
 
 
646 aa  515  1.0000000000000001e-145  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A2391  translation elongation factor, selenocysteine-specific  48.44 
 
 
651 aa  518  1.0000000000000001e-145  Burkholderia pseudomallei 668  Bacteria  normal  0.451398  n/a   
 
 
-
 
NC_009079  BMA10247_A0576  translation elongation factor, selenocysteine-specific  48.44 
 
 
651 aa  518  1.0000000000000001e-145  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1904  translation elongation factor, selenocysteine-specific  48.44 
 
 
651 aa  518  1.0000000000000001e-145  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3382  selenocysteine-specific translation elongation factor  47.06 
 
 
641 aa  516  1.0000000000000001e-145  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1810  selenocysteine-specific translation elongation factor SelB  45.07 
 
 
627 aa  485  1e-136  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.251758 
 
 
-
 
NC_011071  Smal_3266  selenocysteine-specific translation elongation factor  44.77 
 
 
643 aa  459  9.999999999999999e-129  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.901802  normal 
 
 
-
 
CP001509  ECD_03445  selenocysteinyl-tRNA-specific translation factor  44.95 
 
 
614 aa  456  1e-127  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03396  hypothetical protein  44.95 
 
 
614 aa  456  1e-127  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0118  selenocysteine-specific translation elongation factor  44.64 
 
 
614 aa  452  1.0000000000000001e-126  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4088  selenocysteinyl-tRNA-specific translation factor  44.79 
 
 
614 aa  453  1.0000000000000001e-126  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0123  selenocysteinyl-tRNA-specific translation factor  44.79 
 
 
614 aa  453  1.0000000000000001e-126  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E4005  selenocysteinyl-tRNA-specific translation factor  44.48 
 
 
614 aa  452  1.0000000000000001e-126  Shigella boydii CDC 3083-94  Bacteria  normal  0.799296  n/a   
 
 
-
 
NC_011353  ECH74115_4961  selenocysteinyl-tRNA-specific translation factor  44.79 
 
 
614 aa  454  1.0000000000000001e-126  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.503297  normal 
 
 
-
 
NC_010498  EcSMS35_3918  selenocysteinyl-tRNA-specific translation factor  44.48 
 
 
614 aa  451  1e-125  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.696319 
 
 
-
 
NC_009800  EcHS_A3795  selenocysteinyl-tRNA-specific translation factor  44.64 
 
 
614 aa  452  1e-125  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_2869  selenocysteine-specific translation elongation factor  43.97 
 
 
655 aa  451  1e-125  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0571166  n/a   
 
 
-
 
NC_008686  Pden_2825  selenocysteine-specific translation elongation factor  44.94 
 
 
643 aa  447  1.0000000000000001e-124  Paracoccus denitrificans PD1222  Bacteria  normal  0.518854  normal 
 
 
-
 
NC_011094  SeSA_A3882  selenocysteinyl-tRNA-specific translation factor  43.46 
 
 
616 aa  427  1e-118  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_0141  selenocysteinyl-tRNA-specific translation factor  44.44 
 
 
621 aa  425  1e-117  Enterobacter sp. 638  Bacteria  normal  0.645753  normal  0.973594 
 
 
-
 
NC_011083  SeHA_C4005  selenocysteinyl-tRNA-specific translation factor  43.3 
 
 
616 aa  424  1e-117  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.187255 
 
 
-
 
NC_011149  SeAg_B3896  selenocysteinyl-tRNA-specific translation factor  43.15 
 
 
616 aa  422  1e-117  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A4067  selenocysteinyl-tRNA-specific translation factor  43.3 
 
 
616 aa  425  1e-117  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A3960  selenocysteinyl-tRNA-specific translation factor  43.3 
 
 
616 aa  424  1e-117  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.293877  normal  0.449434 
 
 
-
 
NC_009832  Spro_0091  selenocysteinyl-tRNA-specific translation factor  43.85 
 
 
615 aa  421  1e-116  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_4114  selenocysteinyl-tRNA-specific translation factor  42.13 
 
 
657 aa  408  1.0000000000000001e-112  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_0043  selenocysteinyl-tRNA-specific translation factor  42.28 
 
 
657 aa  409  1.0000000000000001e-112  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0443  selenocysteine-specific translation elongation factor  39.78 
 
 
635 aa  395  1e-108  Shewanella pealeana ATCC 700345  Bacteria  normal  0.363793  n/a   
 
 
-
 
NC_011666  Msil_3332  selenocysteine-specific translation elongation factor  42.2 
 
 
691 aa  386  1e-106  Methylocella silvestris BL2  Bacteria  n/a    normal  0.665581 
 
 
-
 
NC_010814  Glov_3567  selenocysteine-specific translation elongation factor  38.16 
 
 
636 aa  379  1e-104  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3415  selenocysteine-specific translation elongation factor SelB  37.97 
 
 
636 aa  366  1e-100  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0102  selenocysteine-specific translation elongation factor  37.29 
 
 
636 aa  356  5.999999999999999e-97  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0035  selenocysteine-specific translation elongation factor  36.28 
 
 
636 aa  351  2e-95  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0107  selenocysteine-specific translation elongation factor SelB  37.23 
 
 
673 aa  350  4e-95  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0034  selenocysteine-specific translation elongation factor  36.12 
 
 
636 aa  348  1e-94  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008322  Shewmr7_0102  selenocysteine-specific translation elongation factor SelB  36.92 
 
 
673 aa  348  2e-94  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0110  selenocysteine-specific translation elongation factor  37.36 
 
 
681 aa  345  1e-93  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0107  selenocysteine-specific translation elongation factor SelB  36.62 
 
 
673 aa  345  1e-93  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0106  selenocysteine-specific translation elongation factor  37.17 
 
 
673 aa  345  2e-93  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008554  Sfum_1220  selenocysteine-specific translation elongation factor  33.23 
 
 
642 aa  342  2e-92  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.00584658  normal  0.153868 
 
 
-
 
NC_011663  Sbal223_0109  selenocysteine-specific translation elongation factor  37.75 
 
 
681 aa  340  2.9999999999999998e-92  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0164  selenocysteine-specific translation elongation factor  36.15 
 
 
636 aa  340  4e-92  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0105  selenocysteine-specific translation elongation factor  37.71 
 
 
681 aa  340  4e-92  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0762  selenocysteine-specific translation elongation factor  34.63 
 
 
634 aa  331  2e-89  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.97012  normal 
 
 
-
 
NC_008346  Swol_2560  selenocysteine-specific translation elongation factor  32.7 
 
 
631 aa  330  6e-89  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.475206  n/a   
 
 
-
 
NC_007644  Moth_2503  selenocysteine-specific translation elongation factor SelB  36.12 
 
 
634 aa  328  2.0000000000000001e-88  Moorella thermoacetica ATCC 39073  Bacteria  decreased coverage  0.00650537  normal  0.143065 
 
 
-
 
NC_007498  Pcar_0832  selenocysteine-specific translation elongation factor  34.07 
 
 
637 aa  328  3e-88  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2185  selenocysteine-specific translation elongation factor  33.91 
 
 
635 aa  321  1.9999999999999998e-86  Desulfotomaculum reducens MI-1  Bacteria  normal  0.573253  n/a   
 
 
-
 
NC_007519  Dde_3173  selenocysteine-specific translation elongation factor SelB  34.52 
 
 
644 aa  321  3e-86  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2084  selenocysteine-specific translation elongation factor  29.98 
 
 
635 aa  321  3e-86  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2506  selenocysteine-specific translation elongation factor  34.51 
 
 
650 aa  321  3e-86  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008261  CPF_2372  selenocysteine-specific translation elongation factor  30.14 
 
 
635 aa  318  2e-85  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0673  selenocysteine-specific translation elongation factor  37.52 
 
 
635 aa  315  9.999999999999999e-85  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2019  selenocysteine-specific translation elongation factor  32.7 
 
 
634 aa  315  1.9999999999999998e-84  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0284313  n/a   
 
 
-
 
NC_009943  Dole_0653  selenocysteine-specific translation elongation factor  32.52 
 
 
636 aa  314  2.9999999999999996e-84  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0190681  n/a   
 
 
-
 
NC_010424  Daud_1094  selenocysteine-specific translation elongation factor  34.11 
 
 
635 aa  313  6.999999999999999e-84  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0447  selenocysteine-specific translation elongation factor  36.34 
 
 
649 aa  310  4e-83  Anaeromyxobacter sp. K  Bacteria  normal  0.436923  n/a   
 
 
-
 
NC_011891  A2cp1_0448  selenocysteine-specific translation elongation factor  36.34 
 
 
649 aa  310  4e-83  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0419  selenocysteine-specific translation elongation factor SelB  36.34 
 
 
649 aa  308  2.0000000000000002e-82  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4266  selenocysteine-specific translation elongation factor  31.92 
 
 
634 aa  307  3e-82  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2441  selenocysteine-specific translation elongation factor  33.85 
 
 
642 aa  307  5.0000000000000004e-82  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1647  selenocysteine-specific translation elongation factor  31.66 
 
 
644 aa  306  1.0000000000000001e-81  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.00236334  hitchhiker  0.000000010303 
 
 
-
 
NC_010718  Nther_1114  selenocysteine-specific translation elongation factor  30.39 
 
 
633 aa  304  3.0000000000000004e-81  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.366063 
 
 
-
 
NC_011883  Ddes_2086  selenocysteine-specific translation elongation factor  34.19 
 
 
657 aa  302  1e-80  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.0347898  n/a   
 
 
-
 
NC_013525  Tter_1385  selenocysteine-specific translation elongation factor  32.7 
 
 
619 aa  298  3e-79  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009675  Anae109_4150  selenocysteine-specific translation elongation factor  35.83 
 
 
649 aa  296  9e-79  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  hitchhiker  0.00997007 
 
 
-
 
NC_013522  Taci_0769  selenocysteine-specific translation elongation factor  33.75 
 
 
629 aa  290  7e-77  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.709604  n/a   
 
 
-
 
NC_013204  Elen_1693  selenocysteine-specific translation elongation factor  34.17 
 
 
643 aa  288  2e-76  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.986647 
 
 
-
 
NC_013440  Hoch_6613  selenocysteine-specific translation elongation factor  34.05 
 
 
648 aa  281  3e-74  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0913819 
 
 
-
 
NC_013165  Shel_25300  selenocysteine-specific elongation factor SelB  34.17 
 
 
641 aa  281  3e-74  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.291858 
 
 
-
 
NC_013170  Ccur_11400  selenocysteine-specific elongation factor SelB  32.53 
 
 
657 aa  271  2e-71  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_4628  selenocysteine-specific translation elongation factor SelB  32.5 
 
 
628 aa  265  1e-69  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.889697 
 
 
-
 
NC_008148  Rxyl_1982  selenocysteine-specific translation elongation factor SelB  34.76 
 
 
612 aa  261  2e-68  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.869997  n/a   
 
 
-
 
NC_009972  Haur_1123  selenocysteine-specific translation elongation factor  31.01 
 
 
627 aa  234  3e-60  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_0832  translation elongation factor, selenocysteine-specific  25.74 
 
 
611 aa  230  6e-59  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.5118  n/a   
 
 
-
 
NC_013441  Gbro_3580  selenocysteine-specific translation elongation factor  31.21 
 
 
597 aa  209  1e-52  Gordonia bronchialis DSM 43247  Bacteria  normal  0.144942  n/a   
 
 
-
 
NC_009380  Strop_0585  selenocysteine-specific translation elongation factor  30.93 
 
 
604 aa  207  6e-52  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009802  CCC13826_0756  selenocysteine-specific translation elongation factor  35.54 
 
 
606 aa  205  3e-51  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_0541  selenocysteine-specific translation elongation factor  27.45 
 
 
605 aa  200  5e-50  Campylobacter curvus 525.92  Bacteria  hitchhiker  0.00149249  n/a   
 
 
-
 
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