| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6555 |
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| Symbol | |
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| ID | 6278717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 2844480 |
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| End bp | 2846393 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642617582 |
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| Product | selenocysteine-specific translation elongation factor |
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| Protein accession | YP_001890225 |
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| Protein GI | 187921193 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
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| TIGRFAM ID | [TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0281066 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.00125424 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCGTCG GTACGGCGGG GCATATCGAC CACGGTAAGA CGAGCCTGGT GAAAGCGCTA
TCGGGCGTCG ATACGGATCG GCTCAAGGAA GAAAAGGCGC GCGGCATTTC GATCGAACTG
GGCTATGCGT ACGTGCCGCT GGAGAACGGC GACGTGCTCG GTTTGATCGA TGTGCCGGGT
CACGAAAAGC TCGTGCATAC GATGACCGCG GGCGCGAGCG GCATCGATTT CGCACTGCTG
GTGATCGCCG CCGACGACGG TGTGATGCCG CAAACGCGCG AGCATCTGGC GATTGTCGAA
CTGCTCGGGA TTCGGCAAGG CGCCGTCGCG CTAACCAAGG TGGACCGCGT CGACGCGCAG
CGTCTGCGCG AAGTGCATGA CGAAGTACGG GCGTTTCTGA GCGGCAGCGT ACTTCAGGAC
GCGCCCGTGT TCGATACTTG CGCAGTGCAG GCCGACGATC CCGGCGTTGC CGCGTTGAAG
GCGCATCTGC ACGCGGCGGC CGCGGCGTGG CGAATGAAGC GGGACGACGG CTTGTTTCGT
CTCGCGGTCG ATCGTGTCTT CACGCTCTCG GGCCAGGGCA CGATCGTGAC CGGAACCGTG
GTGTCGGGCC GCGTAGCGGT GGGCGACACG ATGCTGCTCG CGCCGAAGAA TCAACCGGTG
CGTGTGCGCA GCATTCATGC GCAAAATCGT CCGGCGCAGA GCGGACGCGC TGGCGAGCGC
TGCGCATTGA ACCTCGCGGG CATCGAGAAG AGCGCGATCG ATCGTGGCGA CTGGATCGTC
GATCCGCGGC TCTCGCAAGC GTCGGAGCGA ATCGACGTCA TGCTGACGCT GCTCGCCGAT
GCACCGCATG CGTTGGAGCA TTGGGCGCCG TTGCACGTGC ATCTGGGCAC GCAGCACCAG
GTTGCGCATG TCGCGTTGCT CGACGGGGAA ACGCTCGGCG CCGGTCGGCG TGCCCGCGTT
CAACTCGTGT TCGAGCGACC GGTTTGCGCG CTGCCGGGCG ATCGCTTCGT GGTGCGCAAC
GCGCAGGCCA ATCGCACGAT TGGCGGCGGT CATGTGCTCG ATCCGTTCGC GCCGTCGCGC
AAACGTCGTT CGGTCGAGCG GCTGGCGTGG CTCGATGCGC TTCAGACCAT GCTCGACACC
GCCACGCTCG ACGCTATCTT CGCGAGAGCA CCGCATGGCT TGTCGCGCTC GCTGCTGGAG
CGTTTGACGG GCATGCCGGC GGCCACGCTC GCATTGCCGG CCAACACGCG GGTCGTGGAG
TTGCCAGGCG AAGACGCATT GCTAGTCGCC GACGCGCTTT GGCAAGCGCT CAATTCGCGA
TTGACGGCGA CGCTCGCGCA ATACCACGAA CGCTCGCCTG ACGAGTTGGG GCCGGACATC
TCGCGCTTGC GGCGCATCGC GGCGCCGCTG GTGGACGATG CGCTGTGGCG CGCGCTTGTC
GACGATGCCG CGACGCGTGG CGAGATCGTC AAACGCGGGC CCTGGCTGCA TCTGCCGGGC
CATGCGGTGA CGCTCGACGA AGCGGATCGC GCGCTCGCGG CGACGCTGCT GCCTGCGGTG
AAAGCCGGTG GTTTCGATCC GCCGTGGGTG CGTGATCTGG CCAACGCGCA CGGCGTACCG
GAGGAGCGTG TGCGTCAGTT GATGCGCAAA CTCGCGCGGC AGGGCGAACT GTTTCAGGTC
GTGCGCGATC TTTTTTACCA CCCGCAGATG ATTCGGGAAT TGGCCTCGAT CGCGGCTGCC
GAGGCGCAAA AGAATGCCGG CACGGTTGCG GCCGCACCGT TTCGCGACGT CACCGGGTTG
GGCCGGAAAC GCGCGATCCA GCTTTTGGAG TTCTTCGACC GGGTTGGGTA TACTCGCTTC
CACCGTGGGC TTCATCTGCT GCGCACGGAT AGTCGCTGGC TCGATCTGCT TTGA
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| Protein sequence | MIVGTAGHID HGKTSLVKAL SGVDTDRLKE EKARGISIEL GYAYVPLENG DVLGLIDVPG
HEKLVHTMTA GASGIDFALL VIAADDGVMP QTREHLAIVE LLGIRQGAVA LTKVDRVDAQ
RLREVHDEVR AFLSGSVLQD APVFDTCAVQ ADDPGVAALK AHLHAAAAAW RMKRDDGLFR
LAVDRVFTLS GQGTIVTGTV VSGRVAVGDT MLLAPKNQPV RVRSIHAQNR PAQSGRAGER
CALNLAGIEK SAIDRGDWIV DPRLSQASER IDVMLTLLAD APHALEHWAP LHVHLGTQHQ
VAHVALLDGE TLGAGRRARV QLVFERPVCA LPGDRFVVRN AQANRTIGGG HVLDPFAPSR
KRRSVERLAW LDALQTMLDT ATLDAIFARA PHGLSRSLLE RLTGMPAATL ALPANTRVVE
LPGEDALLVA DALWQALNSR LTATLAQYHE RSPDELGPDI SRLRRIAAPL VDDALWRALV
DDAATRGEIV KRGPWLHLPG HAVTLDEADR ALAATLLPAV KAGGFDPPWV RDLANAHGVP
EERVRQLMRK LARQGELFQV VRDLFYHPQM IRELASIAAA EAQKNAGTVA AAPFRDVTGL
GRKRAIQLLE FFDRVGYTRF HRGLHLLRTD SRWLDLL
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