Gene SbBS512_E4005 details

Gene Information

• Locus tag: SbBS512_E4005
• Symbol: selB
• ID: 6270482
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: -
• Start bp: 3734680
• End bp: 3736524
• Gene Length: 1845 bp
• Protein Length: 614 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 641727851
• Product: selenocysteinyl-tRNA-specific translation factor
• Protein accession: YP_001882283
• Protein GI: 187732429
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG3276] Selenocysteine-specific translation elongation factor
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR00475] selenocysteine-specific elongation factor SelB; [TIGR00485] translation elongation factor TU

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 0.799296
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTATTG CGACTGCCGG ACACGTTGAC CACGGCAAAA CAACCTTATT GCAGGCGATT 
ACTGGCGTAA ATGCTGACCG TCTGCCGGAA GAAAAAAAGC GCGGCATGAC CATCGATCTC 
GGCTATGCCT ACTGGCCGCA GCCGGATGGT CGCGTGCCTG GTTTTATCGA CGTACCCGGT 
CATGAAAAGT TTCTTTCCAA CATGCTGGCG GGCGTTGGTG GTATTGATCA CGCGCTGTTG 
GTGGTGGCGT GCGATGACGG CGTGATGGCG CAGACCCGTG AGCATCTGGC GATTTTGCAG 
CTGACCGGTA ACCCGATGCT GACAGTGGCG CTGACCAAGG CCGATCGCGT GGACGAAGCG 
CGTGTTGATG AGGTTGAACG CCAGGTAAAG GATGTGCTGC GGGAATACGG TTTTGCTGAG 
GCAAAACTGT TTATCACCGC AGCAACCGAA GGTCGGGGAA TTGATGCCCT GCGCGAGCAT 
CTGCTTCAGT TACCAGGACG TGAACACGCC AGCCAACATA GTTTCCGCCT CGCGATCGAC 
CGCCCATTTA CCGTAAAAGG TGCCGGGCTG GTCGTCACCG GTACGGCGTT AAGCGGGGAA 
GTGAAGGTAG GCGATTCACT CTGGCTGACT GGTGTAAATA AACCGATGCG TGTACGTGCG 
CTGCATGCAC AAAACCAGCC AACAGAAACC GCCCATGCCG GGCAGCGTAT CGCGCTTAAC 
ATCGCGGGTG ATGCGGAAAA AGAGCAGATT AACCGTGGCG ACTGGCTGCT TGCCGATGCG 
CCGCCAGAGC CGTTCACACG GGTGATTGTC GAGCTTCAAA CCCATACACC GCTGACCCAG 
TGGCAGCCGC TGCATATTCA CCACGCCGCC AGCCACGTCA CGGGACGCGT TTCACTGCTG 
GAAGATAACC TTGCTGAACT GGTCTTCGAC ACCCCGTTAT GGCTGGCAGA TAACGACCGC 
CTGGTATTGC GCGATATCTC TGCCCGCAAC ACGCTGGCCG GAGCGCGCGT CGTGATGCTT 
AACCCGCCGC GTCGCGGTAA ACGTAAACCA GAGTATCTGC AATGGCTGGC TTCCCTCGCC 
AGGGCACAGA ATGATAGCGA AGCGTTAGCC GTTCACCTGC AACGCGGCGC GGTTAATCTT 
CCTGATTTCG CCTGGGCGCG CCAGCTCAAC GGCGAAGGGA TGCGCGAACT GCTGCAACAG 
CCTGGCTATA TTCAGGCTGG TTATAGCTTG TTGAATGCGC CGGTTGCCGC TCGCTGGCAA 
CGGAAAATTC TCGACACATT AGCGACTTAT CATGAGCAAC ATCGCGATGA ACCTGGGCCT 
GGGCGCGAAC GTCTGCGACG TATGGCGTTG CCAATGGAAG ATGAAGCGCT AGTACTGTTG 
CTGATTGAAA AGATGCGCGA AAGCGGCGAC ATCCTCAGTC ATCACGGTTG GCTGCATCTG 
CCGGATCACA AAGCGGGCTT CAGCGAAGAG CAGCAGGCCA TCTGGCAAAA AGCAGAGCCG 
CTGTTTGGTG ACGAGCCGTG GTGGGTGCGT GATCTGGCAA AAGAGACGGG TACCGACGAG 
CAGGCAATGC GCCTGACGCT ACGCCAGGCG GCGCAGCAAG GAATAATTAC CGCGATCGTC 
AAAGATCGTT ATTACCGTAA CGATCGGATT GTCGAATTTG CCAATATGAT CCGCGATCTC 
GATCAGGAGT GTGGTTCAAC CTGCGCGGCG GATTTCCGCG ATCGCTTAGG CGTAGGCCGA 
AAGCTGGCAA TTCAGATTCT GGAATATTTT GACCGCATTG GCTTTACGCG TCGTCGTGGA 
AATGATCATT TATTGCGCGA CGCATTATTA TTTCCGGAAA AATAA 

 

Protein sequence

MIIATAGHVD HGKTTLLQAI TGVNADRLPE EKKRGMTIDL GYAYWPQPDG RVPGFIDVPG 
HEKFLSNMLA GVGGIDHALL VVACDDGVMA QTREHLAILQ LTGNPMLTVA LTKADRVDEA 
RVDEVERQVK DVLREYGFAE AKLFITAATE GRGIDALREH LLQLPGREHA SQHSFRLAID 
RPFTVKGAGL VVTGTALSGE VKVGDSLWLT GVNKPMRVRA LHAQNQPTET AHAGQRIALN 
IAGDAEKEQI NRGDWLLADA PPEPFTRVIV ELQTHTPLTQ WQPLHIHHAA SHVTGRVSLL 
EDNLAELVFD TPLWLADNDR LVLRDISARN TLAGARVVML NPPRRGKRKP EYLQWLASLA 
RAQNDSEALA VHLQRGAVNL PDFAWARQLN GEGMRELLQQ PGYIQAGYSL LNAPVAARWQ 
RKILDTLATY HEQHRDEPGP GRERLRRMAL PMEDEALVLL LIEKMRESGD ILSHHGWLHL 
PDHKAGFSEE QQAIWQKAEP LFGDEPWWVR DLAKETGTDE QAMRLTLRQA AQQGIITAIV 
KDRYYRNDRI VEFANMIRDL DQECGSTCAA DFRDRLGVGR KLAIQILEYF DRIGFTRRRG 
NDHLLRDALL FPEK