More than 300 homologs were found in PanDaTox collection
for query gene Rfer_0433 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007908  Rfer_0433  short-chain dehydrogenase/reductase SDR  100 
 
 
254 aa  521  1e-147  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3408  short-chain dehydrogenase/reductase SDR  66.67 
 
 
266 aa  349  3e-95  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0359384  normal  0.0764099 
 
 
-
 
NC_007951  Bxe_A0549  putative short-chain dehydrogenase/reductase, FabG-like  66.27 
 
 
266 aa  348  6e-95  Burkholderia xenovorans LB400  Bacteria  normal  0.204322  normal  0.437639 
 
 
-
 
NC_010622  Bphy_2612  short-chain dehydrogenase/reductase SDR  65.48 
 
 
266 aa  345  3e-94  Burkholderia phymatum STM815  Bacteria  normal  normal  0.227086 
 
 
-
 
NC_007510  Bcep18194_A3706  Short-chain dehydrogenase/reductase SDR  64.8 
 
 
268 aa  342  4e-93  Burkholderia sp. 383  Bacteria  normal  0.283086  normal  0.654023 
 
 
-
 
NC_010084  Bmul_2761  short-chain dehydrogenase/reductase SDR  64.8 
 
 
264 aa  339  2.9999999999999998e-92  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.386853 
 
 
-
 
NC_008390  Bamb_0525  short-chain dehydrogenase/reductase SDR  63.64 
 
 
271 aa  332  3e-90  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3483  NAD dependent epimerase/dehydratase family protein  63.2 
 
 
271 aa  328  3e-89  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2483  short chain dehydrogenase/reductase family oxidoreductase  63.2 
 
 
268 aa  328  4e-89  Burkholderia mallei ATCC 23344  Bacteria  normal  0.709099  n/a   
 
 
-
 
NC_007434  BURPS1710b_3480  short chain dehydrogenase/reductase family oxidoreductase  63.2 
 
 
268 aa  328  4e-89  Burkholderia pseudomallei 1710b  Bacteria  normal  0.538943  n/a   
 
 
-
 
NC_008836  BMA10229_A1263  short chain dehydrogenase/reductase family oxidoreductase  63.2 
 
 
268 aa  328  4e-89  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3445  NAD dependent epimerase/dehydratase family protein  63.2 
 
 
268 aa  328  4e-89  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0403  short chain dehydrogenase/reductase family oxidoreductase  63.2 
 
 
268 aa  328  4e-89  Burkholderia mallei SAVP1  Bacteria  normal  0.253369  n/a   
 
 
-
 
NC_009080  BMA10247_3302  short chain dehydrogenase/reductase family oxidoreductase  63.2 
 
 
268 aa  328  4e-89  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1182  short chain dehydrogenase/reductase family oxidoreductase  65.2 
 
 
271 aa  323  1e-87  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0549  short-chain dehydrogenase/reductase SDR  62.85 
 
 
270 aa  324  1e-87  Burkholderia ambifaria MC40-6  Bacteria  decreased coverage  0.00753595  normal  0.67708 
 
 
-
 
NC_010508  Bcenmc03_0592  short-chain dehydrogenase/reductase SDR  64.8 
 
 
271 aa  320  9.999999999999999e-87  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0410788 
 
 
-
 
NC_008060  Bcen_0141  short-chain dehydrogenase/reductase SDR  64.8 
 
 
271 aa  320  9.999999999999999e-87  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0624  short-chain dehydrogenase/reductase SDR  64.8 
 
 
271 aa  320  9.999999999999999e-87  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0853252  n/a   
 
 
-
 
NC_009654  Mmwyl1_4106  short-chain dehydrogenase/reductase SDR  59.2 
 
 
256 aa  308  5e-83  Marinomonas sp. MWYL1  Bacteria  normal  decreased coverage  0.00000000241543 
 
 
-
 
NC_012791  Vapar_5073  short-chain dehydrogenase/reductase SDR  63.05 
 
 
261 aa  300  1e-80  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0771  GntR family transcriptional regulator  56.03 
 
 
256 aa  292  4e-78  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00515913  normal  0.0552536 
 
 
-
 
NC_008577  Shewana3_2071  short-chain dehydrogenase/reductase SDR  52.73 
 
 
256 aa  279  3e-74  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00640028  hitchhiker  0.00000248708 
 
 
-
 
NC_008321  Shewmr4_1984  short-chain dehydrogenase/reductase SDR  52.34 
 
 
256 aa  275  3e-73  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00682949  normal  0.0302653 
 
 
-
 
NC_008322  Shewmr7_1990  short-chain dehydrogenase/reductase SDR  52.34 
 
 
256 aa  275  4e-73  Shewanella sp. MR-7  Bacteria  normal  0.0224708  unclonable  0.0000202886 
 
 
-
 
NC_012560  Avin_51440  Short-chain dehydrogenase/reductase (SDR) family protein  57.6 
 
 
260 aa  272  3e-72  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2061  short-chain dehydrogenase/reductase SDR  51.56 
 
 
256 aa  270  2e-71  Shewanella putrefaciens CN-32  Bacteria  normal  0.138185  n/a   
 
 
-
 
NC_007912  Sde_0761  putative oxidoreductase  50.61 
 
 
255 aa  266  4e-70  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.429001 
 
 
-
 
NC_011663  Sbal223_2145  short-chain dehydrogenase/reductase SDR  50 
 
 
256 aa  263  3e-69  Shewanella baltica OS223  Bacteria  normal  0.0597739  normal  0.690345 
 
 
-
 
NC_009484  Acry_2599  short-chain dehydrogenase/reductase SDR  50.6 
 
 
257 aa  258  7e-68  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0389  short-chain dehydrogenase/reductase SDR  53.39 
 
 
261 aa  253  2.0000000000000002e-66  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.132836  normal  0.554145 
 
 
-
 
NC_007802  Jann_2374  short-chain dehydrogenase/reductase SDR  49.8 
 
 
251 aa  245  4.9999999999999997e-64  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4189  short-chain dehydrogenase/reductase SDR  49.6 
 
 
255 aa  244  9.999999999999999e-64  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4077  short-chain dehydrogenase/reductase SDR  49.6 
 
 
255 aa  244  9.999999999999999e-64  Ralstonia pickettii 12J  Bacteria  normal  0.13973  normal 
 
 
-
 
NC_007953  Bxe_C1363  D-xylose dehydrogenase  45.2 
 
 
268 aa  235  5.0000000000000005e-61  Burkholderia xenovorans LB400  Bacteria  normal  0.879722  normal  0.999685 
 
 
-
 
NC_008254  Meso_3587  short-chain dehydrogenase/reductase SDR  47.84 
 
 
255 aa  235  6e-61  Chelativorans sp. BNC1  Bacteria  normal  0.435673  n/a   
 
 
-
 
NC_012791  Vapar_1041  short-chain dehydrogenase/reductase SDR  47.18 
 
 
258 aa  230  1e-59  Variovorax paradoxus S110  Bacteria  normal  0.208357  n/a   
 
 
-
 
NC_008786  Veis_0735  short-chain dehydrogenase/reductase SDR  47.41 
 
 
270 aa  230  2e-59  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.304096  normal 
 
 
-
 
NC_010505  Mrad2831_5401  short-chain dehydrogenase/reductase SDR  46.8 
 
 
258 aa  230  2e-59  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0941  short-chain dehydrogenase/reductase SDR  48.19 
 
 
251 aa  221  7e-57  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.995863 
 
 
-
 
NC_009654  Mmwyl1_0516  short-chain dehydrogenase/reductase SDR  45.28 
 
 
254 aa  221  9.999999999999999e-57  Marinomonas sp. MWYL1  Bacteria  normal  0.098133  normal 
 
 
-
 
NC_008752  Aave_2258  short-chain dehydrogenase/reductase SDR  46.99 
 
 
271 aa  218  7e-56  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0225727  hitchhiker  0.000000282328 
 
 
-
 
NC_009049  Rsph17029_0037  short-chain dehydrogenase/reductase SDR  49.6 
 
 
260 aa  213  1.9999999999999998e-54  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1369  Short-chain dehydrogenase/reductase SDR  49.2 
 
 
260 aa  213  2.9999999999999995e-54  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1729  D-xylose dehydrogenase  46.8 
 
 
245 aa  211  7e-54  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.380531  n/a   
 
 
-
 
NC_008043  TM1040_3488  short-chain dehydrogenase/reductase SDR  45.53 
 
 
256 aa  209  2e-53  Ruegeria sp. TM1040  Bacteria  normal  normal  0.742718 
 
 
-
 
NC_009952  Dshi_1243  short-chain dehydrogenase/reductase SDR  47.72 
 
 
258 aa  209  2e-53  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.455666  normal  0.236793 
 
 
-
 
NC_009636  Smed_0438  short-chain dehydrogenase/reductase SDR  42.97 
 
 
256 aa  207  1e-52  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.285603 
 
 
-
 
NC_012850  Rleg_0546  short-chain dehydrogenase/reductase SDR  47.39 
 
 
257 aa  204  1e-51  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0503  short-chain dehydrogenase/reductase SDR  46.59 
 
 
253 aa  203  2e-51  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_4001  short-chain dehydrogenase/reductase SDR  40.48 
 
 
259 aa  201  9e-51  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_3529  short-chain dehydrogenase/reductase SDR  41.9 
 
 
270 aa  201  9.999999999999999e-51  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0027  short-chain dehydrogenase/reductase SDR  47.2 
 
 
288 aa  199  3.9999999999999996e-50  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3834  short-chain dehydrogenase/reductase SDR  41.57 
 
 
256 aa  196  3e-49  Jannaschia sp. CCS1  Bacteria  normal  0.140905  normal 
 
 
-
 
BN001304  ANIA_07128  conserved hypothetical protein  37.97 
 
 
275 aa  194  2e-48  Aspergillus nidulans FGSC A4  Eukaryota  hitchhiker  0.00131023  normal  0.0770254 
 
 
-
 
NC_010506  Swoo_3666  short-chain dehydrogenase/reductase SDR  36.86 
 
 
255 aa  174  9e-43  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00136979  normal 
 
 
-
 
NC_011737  PCC7424_5536  short-chain dehydrogenase/reductase SDR  35.57 
 
 
254 aa  150  1e-35  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0819159 
 
 
-
 
NC_008740  Maqu_1429  short-chain dehydrogenase/reductase SDR  35.57 
 
 
256 aa  145  7.0000000000000006e-34  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008697  Noca_4841  short-chain dehydrogenase/reductase SDR  34.54 
 
 
258 aa  144  2e-33  Nocardioides sp. JS614  Bacteria  normal  0.166683  normal 
 
 
-
 
NC_011898  Ccel_1173  short-chain dehydrogenase/reductase SDR  32.67 
 
 
256 aa  139  3e-32  Clostridium cellulolyticum H10  Bacteria  normal  0.0283651  n/a   
 
 
-
 
NC_010003  Pmob_0729  short-chain dehydrogenase/reductase SDR  31.97 
 
 
251 aa  139  6e-32  Petrotoga mobilis SJ95  Bacteria  normal  0.0262547  n/a   
 
 
-
 
NC_007488  RSP_3963  Short-chain dehydrogenase/reductase SDR  37.65 
 
 
251 aa  138  7e-32  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.680971  n/a   
 
 
-
 
NC_009505  BOV_1080  short chain dehydrogenase/reductase family oxidoreductase  33.61 
 
 
246 aa  137  1e-31  Brucella ovis ATCC 25840  Bacteria  normal  0.38691  n/a   
 
 
-
 
NC_008062  Bcen_5486  short chain dehydrogenase  35.63 
 
 
262 aa  137  1e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.398056  n/a   
 
 
-
 
NC_008544  Bcen2424_6772  short chain dehydrogenase  35.63 
 
 
262 aa  137  1e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.646299 
 
 
-
 
NC_010512  Bcenmc03_6360  short chain dehydrogenase  35.22 
 
 
262 aa  138  1e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_2067  short-chain dehydrogenase/reductase SDR  34.44 
 
 
246 aa  137  2e-31  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3851  short-chain dehydrogenase/reductase SDR  35.16 
 
 
256 aa  136  3.0000000000000003e-31  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.575902  normal  0.466968 
 
 
-
 
NC_010320  Teth514_1783  3-ketoacyl-(acyl-carrier-protein) reductase  31.73 
 
 
255 aa  135  5e-31  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000332127  n/a   
 
 
-
 
NC_013411  GYMC61_1779  short-chain dehydrogenase/reductase SDR  34.29 
 
 
249 aa  135  6.0000000000000005e-31  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007509  Bcep18194_C7178  short chain dehydrogenase  34.41 
 
 
262 aa  135  6.0000000000000005e-31  Burkholderia sp. 383  Bacteria  normal  normal  0.0959368 
 
 
-
 
NC_013510  Tcur_3357  short-chain dehydrogenase/reductase SDR  35.34 
 
 
253 aa  135  6.0000000000000005e-31  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00078495  n/a   
 
 
-
 
NC_008786  Veis_2457  short-chain dehydrogenase/reductase SDR  34.78 
 
 
265 aa  135  6.0000000000000005e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR1122  short chain dehydrogenase/reductase family oxidoreductase  33.2 
 
 
246 aa  135  8e-31  Brucella suis 1330  Bacteria  normal  0.0726405  n/a   
 
 
-
 
NC_008782  Ajs_2100  short-chain dehydrogenase/reductase SDR  31.97 
 
 
250 aa  134  9.999999999999999e-31  Acidovorax sp. JS42  Bacteria  normal  0.0527344  normal 
 
 
-
 
NC_008254  Meso_2493  short-chain dehydrogenase/reductase SDR  35.46 
 
 
253 aa  134  1.9999999999999998e-30  Chelativorans sp. BNC1  Bacteria  normal  0.0816082  n/a   
 
 
-
 
NC_007950  Bpro_5564  short-chain dehydrogenase/reductase SDR  32.79 
 
 
250 aa  133  3.9999999999999996e-30  Polaromonas sp. JS666  Bacteria  normal  0.0387947  normal 
 
 
-
 
NC_008254  Meso_2966  short-chain dehydrogenase/reductase SDR  35.41 
 
 
260 aa  132  6e-30  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_6308  short chain dehydrogenase  34.41 
 
 
262 aa  132  7.999999999999999e-30  Burkholderia ambifaria AMMD  Bacteria  normal  0.435974  normal  0.367823 
 
 
-
 
NC_009712  Mboo_0405  short-chain dehydrogenase/reductase SDR  34.84 
 
 
245 aa  131  9e-30  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_007973  Rmet_3320  short chain dehydrogenase  34.26 
 
 
262 aa  131  1.0000000000000001e-29  Cupriavidus metallidurans CH34  Bacteria  normal  0.694446  normal 
 
 
-
 
NC_010557  BamMC406_6012  short chain dehydrogenase  33.33 
 
 
262 aa  130  2.0000000000000002e-29  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.998031 
 
 
-
 
NC_008687  Pden_3583  short-chain dehydrogenase/reductase SDR  35.08 
 
 
279 aa  130  2.0000000000000002e-29  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0104  short-chain dehydrogenase/reductase SDR  32.51 
 
 
246 aa  130  3e-29  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.650868  normal 
 
 
-
 
NC_008009  Acid345_0642  short-chain dehydrogenase/reductase SDR  34.94 
 
 
252 aa  130  3e-29  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.220005 
 
 
-
 
NC_012560  Avin_22070  short chain dehydrogenase  35.63 
 
 
252 aa  130  3e-29  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_0716  short-chain dehydrogenase/reductase SDR  36.95 
 
 
249 aa  129  4.0000000000000003e-29  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_0909  short-chain dehydrogenase/reductase SDR  31.15 
 
 
244 aa  129  4.0000000000000003e-29  Psychrobacter sp. PRwf-1  Bacteria  normal  0.271894  normal 
 
 
-
 
NC_013205  Aaci_1211  short-chain dehydrogenase/reductase SDR  32.24 
 
 
250 aa  129  4.0000000000000003e-29  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.663428  n/a   
 
 
-
 
NC_014158  Tpau_3804  short-chain dehydrogenase/reductase SDR  35.63 
 
 
253 aa  129  5.0000000000000004e-29  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B0594  putative short-chain type dehydrogenase  35.89 
 
 
252 aa  129  6e-29  Burkholderia xenovorans LB400  Bacteria  normal  0.722821  normal  0.132881 
 
 
-
 
NC_007517  Gmet_2249  Short-chain dehydrogenase/reductase SDR  33.73 
 
 
260 aa  128  7.000000000000001e-29  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000000000113674  decreased coverage  1.89116e-19 
 
 
-
 
NC_008148  Rxyl_0541  short-chain dehydrogenase/reductase SDR  33.06 
 
 
251 aa  127  2.0000000000000002e-28  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008697  Noca_4814  short-chain dehydrogenase/reductase SDR  33.06 
 
 
257 aa  127  2.0000000000000002e-28  Nocardioides sp. JS614  Bacteria  normal  0.19857  normal 
 
 
-
 
NC_010676  Bphyt_7060  short chain dehydrogenase  33.47 
 
 
255 aa  127  2.0000000000000002e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.556367 
 
 
-
 
NC_012918  GM21_2843  short-chain dehydrogenase/reductase SDR  34.25 
 
 
255 aa  127  2.0000000000000002e-28  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010552  BamMC406_4567  short chain dehydrogenase  33.2 
 
 
256 aa  126  3e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  0.16205  hitchhiker  0.000267636 
 
 
-
 
NC_009523  RoseRS_4552  short-chain dehydrogenase/reductase SDR  32.39 
 
 
246 aa  126  3e-28  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009427  Saro_3667  short-chain dehydrogenase/reductase SDR  35.34 
 
 
259 aa  126  3e-28  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2271  short-chain dehydrogenase/reductase SDR  31.89 
 
 
257 aa  126  3e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
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