| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2258 |
|---|
| Symbol | |
|---|
| ID | 4669925 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 2484861 |
|---|
| End bp | 2485676 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639823463 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_970610 |
|---|
| Protein GI | 120610932 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0225727 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000282328 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCAGA TTTCACCCGT TCCTTCTTCC GGCGCCGCCG CCTCGCCGTC CGGAGCCCTG
TCGGTGTTTC CCAGCCTGCG CGGACGCGTG GTGTTCGTGA CGGGTGGCGG CAGCGGGATC
GGCGCCGCCA TCGTCACGGC CTTCGCCGAG CAGGGCGCGC GCGTGGCGTT CGTGGACGTG
GCCCGCGAGG CCAGCGGGCA GCTGGTCCGC GACATGGAGG CCGCGGGCCT GCCGCGCCCC
TGGTGGCGCG AGTGCGACGT GCGCGACATC GATGCCCTGC GCGCCGCCCT GCGCGATGCC
GCGGCCGAGC TGGGCGATGT CTCCGTGCTG GTCAACAACG TGGCCAGCGA CGACCGCCAC
ACGCTGGAGT CCGTCACCCC CGAGTACTAT GACGAACGCA TGGCGATCAA CGAGCGCCCG
GCCTTCTTCG CGATCCAGGC GGTGGTGCCG GGCATGCGCC GGCTCGGCGG CGGCTCCATC
GTCAACCTCG GCTCCACCGG CTGGCAGGGC AAGGGGTCGG GCTACCCCTG CTATGCGATC
GCCAAGTCGT CGGTGAACGG GCTCACCCGG GGCCTGGCGC GCACGCTGGG CCAGGACCGC
ATCCGCATCA ACACCGTGTC CCCCGGCTGG GTGATGACCG AGCGCCAGAT CCGGCTGTGG
CTCGACGCCG AGGGCGAGCG GGAACTCGCG CGCAACCAGT GCCTGCCCGA CAAGCTGCAG
CCGCGCGACA TCGCGCGCAT GGTGCTGTTC CTGGGCTCCG ACGACGCCGC GATGTGCACC
GCGCAGGAGT TCAAGGTGGA CGCTGGATGG GTCTAG
|
|---|
| Protein sequence | MSQISPVPSS GAAASPSGAL SVFPSLRGRV VFVTGGGSGI GAAIVTAFAE QGARVAFVDV
AREASGQLVR DMEAAGLPRP WWRECDVRDI DALRAALRDA AAELGDVSVL VNNVASDDRH
TLESVTPEYY DERMAINERP AFFAIQAVVP GMRRLGGGSI VNLGSTGWQG KGSGYPCYAI
AKSSVNGLTR GLARTLGQDR IRINTVSPGW VMTERQIRLW LDAEGERELA RNQCLPDKLQ
PRDIARMVLF LGSDDAAMCT AQEFKVDAGW V
|
|---|
| |