| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1041 |
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| Symbol | |
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| ID | 7972012 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1138880 |
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| End bp | 1139656 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791637 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002942958 |
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| Protein GI | 239814048 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.208357 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAGGATT CCCCGCAGCT TTCGATCCAT CCCAGCCTGA AGGGCCGCAC GGTGTTCGTC
ACCGGCGGCG GCAGCGGCAT TGGCGCGGCC ATGGTGGCCG CGTTCGCCGC GCAGGGCGCA
CGCGTGGCCT TCGTCGACAT TGCCGAAGGC GCCAGCGCCG CGCTCGCCCA GCGCATCGCG
CAAGAAGGCC ATGCCGCGCC ATGGTGGCGC GCTTGCGACG TGCGCGACAT CGGCGCGCTG
CAAAAAGCCA TTGCCGACGC GGCCGCCGAG CTCGGCGACT TTGCGGTGCT GGTCAACAAC
GTGGCAAGCG ACGACCGCCA CACGCTCGAA TCGGTCACGC CCGACTACTA CGACAACCGC
ATGGCCATCA ACGAGCGGCC CGCGCTGTTC GCGATCCAGT CGGTGGTGCC GGGCATGCGC
CGGCTGGGCT TCGGCTCGGT CATCAACCTG GGCTCCACGG GCTGGCAGAC CAAGGGCTCG
GGCTACCCCT GCTACGCAAT TGCCAAGTCC TCGGTCAACG GCCTCACGCG CGGCCTCGCA
GTGGAACTGG GCCGTGACCG CATCCGCATC AACACCGTGT CGCCCGGCTG GGTGATGACC
GAGCGGCAGG TGCAGCTCTG GCTCGACGAC GAAGGCGAGC AATCGCTCAA GCGCAACCAG
TGCCTGCCCG ACAAGCTGAT GCCCGAGGAC ATCGCGCGCA TGGTGCTGTT CCTCGCGTCG
GACGACGCCA GGATGTGCAC CGCGCAGGAG TTCACCGTGG ACGCGGGCTG GACCTGA
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| Protein sequence | MKDSPQLSIH PSLKGRTVFV TGGGSGIGAA MVAAFAAQGA RVAFVDIAEG ASAALAQRIA
QEGHAAPWWR ACDVRDIGAL QKAIADAAAE LGDFAVLVNN VASDDRHTLE SVTPDYYDNR
MAINERPALF AIQSVVPGMR RLGFGSVINL GSTGWQTKGS GYPCYAIAKS SVNGLTRGLA
VELGRDRIRI NTVSPGWVMT ERQVQLWLDD EGEQSLKRNQ CLPDKLMPED IARMVLFLAS
DDARMCTAQE FTVDAGWT
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