Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_6012 |
Symbol | |
ID | 6181897 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010557 |
Strand | - |
Start bp | 568260 |
End bp | 569048 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641689142 |
Product | short chain dehydrogenase |
Protein accession | YP_001816001 |
Protein GI | 172065289 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.998031 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGCCC TTGCTGGCAA AGTCGCACTC GTCACCGGCG GCGCCACGCT GATCGGCGCC GCCGTCGCGC AGGACCTGAG CCGCGCCGGC GCATGCGTCG CGATCCTCGA TCTCGATGCG GAAAACGGCG CACGCGTGGC CGATGCGCTC GGTGAACGCG GGATGTTCAT CGCGACCGAC ATCACCGACG ACCGTGCGAT CGAACACGCG GTATCGGCCG TCGCCGAACG CTTCGGCGCG ATCGACCTGC TGATCAACCT CGCCTGCAGC TACGTCGACA ACGGCATCCA GGCGTCGCGT CGCGACTGGC TCGCGGCGAT GGACGTCAAC GTCGTGTCGG CCGCGATGCT GGTCAAGGCC GTTCATCCAC ACCTGGTGCG GCGCGGCGGC GGCGCGATCG TGAACTTCAG TTCGATCTCC GCGCAATGCG CGCAGACCGG CCGCTGGCTC TACCCGACCT CGAAGGCCGC GATCCGCCAG CTCACGCGCA GCATGGCGAT GGATCTCGCC GCCGACCGGA TTCGCGTGAA CTCGGTGTCG CCTGGCTGGA CCTGGTCGCG CGTGATGGAT GAGCTGACGC ACGGCGACCG CGCGAAGACT AACCGCGTGG CCGCTCCGTT TCATCTGCTC GGTCGTGTCG GCGACCCGTC GGAAGTCGCA CAGGTCGTCA CGTTCCTGTG CAGCGACGCC GCGAGCTTCG TGACGGGCGC CGACTACGCG GTGGACGGCG GCTATTCCGC GATGGGCCCC GAGCAAGCGG TGCCGGCGAT TCCGCGCCTC GCGGAGTAA
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Protein sequence | MTALAGKVAL VTGGATLIGA AVAQDLSRAG ACVAILDLDA ENGARVADAL GERGMFIATD ITDDRAIEHA VSAVAERFGA IDLLINLACS YVDNGIQASR RDWLAAMDVN VVSAAMLVKA VHPHLVRRGG GAIVNFSSIS AQCAQTGRWL YPTSKAAIRQ LTRSMAMDLA ADRIRVNSVS PGWTWSRVMD ELTHGDRAKT NRVAAPFHLL GRVGDPSEVA QVVTFLCSDA ASFVTGADYA VDGGYSAMGP EQAVPAIPRL AE
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