| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3488 |
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| Symbol | |
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| ID | 4075128 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 521360 |
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| End bp | 522130 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638005003 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_611722 |
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| Protein GI | 99078464 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.742718 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCTGA ACGCAACCTT TCACGACCTT GAAGGCGCTT CCGTTTTTAT CACCGGAGGC
GGTTCGGGCA TCGGCGCATC GCTCACCGAG GGCTTCTTGC GGCAGGGGGC CAAAGTGGCC
TTTGTCGGGC GCTCTGATGC CAGCGCTTTT GTCGACAGGA TGGCGGAAGA GACGGGCTCG
CGGCCCCTCT TCATTCAATG CGACATCACT GACATTGTGG CGCTCAAAGC CGCGATTTCA
CAGGCGGCAG AGGCCCATGG ACCTATCAAG GTGCTGGTGA ACAACGCCGC CAACGATCAG
CGCCACGCCA CGCTCGAGGT GGATGAGGAA TTCTGGGACT GGTCGCAGTC GATCAACCTC
AAGGCCTATT TCTTTGCCTG CCAAGCGGTG TTGCCTGGGA TGCAGGCGCT TGGTGGCGGT
GCGATCGTGA ATTTCACCTC CATCAGCTAC ATGATGGGCA ACAGCGGCTA TCCGGCCTAC
ACCACCGCAA ACTCGGGCAT CAATGGCATG ACCCGCAGCC TCGCGCGCGA ATTCGGCCCG
GACCGCATCC GGGTCAACGC GCTGGCGCCG GGCTGGGTGC TCACGGACAA GCAGCTTGAC
AAATGGGCCA CGCCCGAGGC CCTCGCCGCC CATCTTGAGC GCCAGTGCCT GAAGGATCAT
CTCGCGCCAC AAGACATCGT GGAGTCGACA CTTTTTCTGG CCTCCAACGC CAGCCGGATG
ATCTCCGGTC AAGCCTTGGT GGTGGATGGT GGCGTCGTGG TGTCGGGATG A
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| Protein sequence | MDLNATFHDL EGASVFITGG GSGIGASLTE GFLRQGAKVA FVGRSDASAF VDRMAEETGS
RPLFIQCDIT DIVALKAAIS QAAEAHGPIK VLVNNAANDQ RHATLEVDEE FWDWSQSINL
KAYFFACQAV LPGMQALGGG AIVNFTSISY MMGNSGYPAY TTANSGINGM TRSLAREFGP
DRIRVNALAP GWVLTDKQLD KWATPEALAA HLERQCLKDH LAPQDIVEST LFLASNASRM
ISGQALVVDG GVVVSG
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