| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1243 |
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| Symbol | |
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| ID | 5711801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1289516 |
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| End bp | 1290292 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641267155 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001532586 |
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| Protein GI | 159043792 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.455666 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.236793 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCGC CCCGAAACGC CACCTTCCAC GACCTCGACG GCGCATCCGT CTTCGTAACC
GGCGGCGGCT CCGGCATCGG TGCGGCCCTG ACCGACGGCT TTCTCGCCCA GGGCGCGCAG
GTCGCCTTCA TCGGCCGTTC CGACGCCAGC GCCTTCGTGG CAAAGATGCG CGCGGCCCAC
GGACGCGCGC CGCTCTTCGT GCAAGGCGAC ATCACCGATA CCGACGCCCT GCGCGCCGCC
ATCGCCCAGG CCACCGCGGC CCACGGCCCT ATCACCGCGC TGGTGAACAA CGCCGCCAAC
GACAAGCGCC ACAGCACCGC CGAAGTCACC CCGGAGTTCT GGGACCAGAT GCAGGCGATC
AACCTCAAGG CTTATTTCTT CGCCGCCCAG GCCGTCACCC CCGGCATGGC CGAGGCCGGC
GGCGGGGCGA TCGTCAATTT CAGCTCGATC AGCTACATGA TGGGCAACGC AGGCTACCCC
GCCTATACCG CCGCCAATGC CGGGATCACC GGGCTGACCC GCTCGCTCGC CCGCGAATTC
GGCCCGGACG GGATTCGCGT CAACGCCCTC GCCCCGGGCT GGGTCCTGAC CCCGAAACAA
CTGGAGATGT GGGCCACGCC CGAGGATCTC GCCGCCCATC TCGACCGCCA GTGCCTCAAG
ACGCATCTCG CGCCCGAGGA CATCGTGGAG GCGACCCTGT TTCTGGCCTC CGGCGCAAGC
AAGATGATGA CAGGGCAATG CATGGTCGTG GATGGCGGCG TAGTGGTGAC GGGATGA
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| Protein sequence | MPAPRNATFH DLDGASVFVT GGGSGIGAAL TDGFLAQGAQ VAFIGRSDAS AFVAKMRAAH
GRAPLFVQGD ITDTDALRAA IAQATAAHGP ITALVNNAAN DKRHSTAEVT PEFWDQMQAI
NLKAYFFAAQ AVTPGMAEAG GGAIVNFSSI SYMMGNAGYP AYTAANAGIT GLTRSLAREF
GPDGIRVNAL APGWVLTPKQ LEMWATPEDL AAHLDRQCLK THLAPEDIVE ATLFLASGAS
KMMTGQCMVV DGGVVVTG
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