| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5073 |
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| Symbol | |
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| ID | 7974192 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5387031 |
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| End bp | 5387816 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795667 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002946941 |
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| Protein GI | 239818031 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATCG ACGCCTCACC ACTTTCGTCC TACACCGCCC GCTATCCCTC GCTGGCCGGC
CGCACCGTCT TCATCTCCGG CGGTGCGAGC GGCATCGGCG AGGCGCTGGT GCGGGCCTTC
CATGCGCAGG GCGCGAAGGT CGGCTTCTGC GACCTCGACA CGGCCGCCGG CACCGCGCTC
GCGGCGCAAC TGCAGGGCGA CACGCCCGCG CTGTTCCGCG AATGCGACGT GACCGACACG
GCGGCGCTCG CGGCCACCAT TGCCGCGGTG CGCGCGCAAT TCGGCCCGAT CGGCGTGCTG
CTCAACAATG CCGCCAACGA CCGGCGCCAC GAGATGGCCG AGGTCACGAG CGAAGACTTC
GACCGCCTCG TGGCCGTCAA CTTCAAGCAC CAGTTCTTTG CCGCGCAGGC CGTCGCCGAC
GACATGCGCG CGCTGGGCGG CGGCTCGATC ATCAACTTCG GCTCGATCAG CTGGATGATC
AAGGGCCGCG GCTACCCGGT CTACCAGGCC TGCAAGGCGG CCGCGCGCGG CCTCACGCGC
TCGCTGGCGC GCGACCTGGG CAAAGAGAAC ATCCGCGTCA ATTCGATCGT GCCGGGCTGG
GTGATGACCG AGCGGCAGAT CAAGCTGTGG GTCAAGCCCG AGTCGGCCGC GGAGATCGAT
GCGGCGCAAT GCTTGCCGGG GCGCGTGATG GCGGAAGACA TCGCCGCGAT GGCGCTGTTC
CTGGCGGCCG ACGATTCGAA GATGTGCACC GCGCAGGACT ACGTGGTGGA TGCCGGCTGG
ACATAA
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| Protein sequence | MTIDASPLSS YTARYPSLAG RTVFISGGAS GIGEALVRAF HAQGAKVGFC DLDTAAGTAL
AAQLQGDTPA LFRECDVTDT AALAATIAAV RAQFGPIGVL LNNAANDRRH EMAEVTSEDF
DRLVAVNFKH QFFAAQAVAD DMRALGGGSI INFGSISWMI KGRGYPVYQA CKAAARGLTR
SLARDLGKEN IRVNSIVPGW VMTERQIKLW VKPESAAEID AAQCLPGRVM AEDIAAMALF
LAADDSKMCT AQDYVVDAGW T
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