More than 300 homologs were found in PanDaTox collection
for query gene Vapar_5073 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_5073  short-chain dehydrogenase/reductase SDR  100 
 
 
261 aa  532  1e-150  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0433  short-chain dehydrogenase/reductase SDR  63.05 
 
 
254 aa  313  9.999999999999999e-85  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0549  putative short-chain dehydrogenase/reductase, FabG-like  60.24 
 
 
266 aa  301  6.000000000000001e-81  Burkholderia xenovorans LB400  Bacteria  normal  0.204322  normal  0.437639 
 
 
-
 
NC_007510  Bcep18194_A3706  Short-chain dehydrogenase/reductase SDR  58.8 
 
 
268 aa  300  2e-80  Burkholderia sp. 383  Bacteria  normal  0.283086  normal  0.654023 
 
 
-
 
NC_010681  Bphyt_3408  short-chain dehydrogenase/reductase SDR  59.68 
 
 
266 aa  298  6e-80  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0359384  normal  0.0764099 
 
 
-
 
NC_010622  Bphy_2612  short-chain dehydrogenase/reductase SDR  60.08 
 
 
266 aa  296  3e-79  Burkholderia phymatum STM815  Bacteria  normal  normal  0.227086 
 
 
-
 
NC_010084  Bmul_2761  short-chain dehydrogenase/reductase SDR  58.17 
 
 
264 aa  294  1e-78  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.386853 
 
 
-
 
NC_006348  BMA2483  short chain dehydrogenase/reductase family oxidoreductase  58.23 
 
 
268 aa  293  2e-78  Burkholderia mallei ATCC 23344  Bacteria  normal  0.709099  n/a   
 
 
-
 
NC_009074  BURPS668_3445  NAD dependent epimerase/dehydratase family protein  58.23 
 
 
268 aa  293  2e-78  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3480  short chain dehydrogenase/reductase family oxidoreductase  58.23 
 
 
268 aa  293  2e-78  Burkholderia pseudomallei 1710b  Bacteria  normal  0.538943  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0403  short chain dehydrogenase/reductase family oxidoreductase  58.23 
 
 
268 aa  293  2e-78  Burkholderia mallei SAVP1  Bacteria  normal  0.253369  n/a   
 
 
-
 
NC_009080  BMA10247_3302  short chain dehydrogenase/reductase family oxidoreductase  58.23 
 
 
268 aa  293  2e-78  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1263  short chain dehydrogenase/reductase family oxidoreductase  58.23 
 
 
268 aa  293  2e-78  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3483  NAD dependent epimerase/dehydratase family protein  58.23 
 
 
271 aa  293  2e-78  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_0525  short-chain dehydrogenase/reductase SDR  59.92 
 
 
271 aa  292  3e-78  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4106  short-chain dehydrogenase/reductase SDR  56.69 
 
 
256 aa  292  4e-78  Marinomonas sp. MWYL1  Bacteria  normal  decreased coverage  0.00000000241543 
 
 
-
 
NC_007651  BTH_I1182  short chain dehydrogenase/reductase family oxidoreductase  58.63 
 
 
271 aa  288  7e-77  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0549  short-chain dehydrogenase/reductase SDR  58.15 
 
 
270 aa  286  2.9999999999999996e-76  Burkholderia ambifaria MC40-6  Bacteria  decreased coverage  0.00753595  normal  0.67708 
 
 
-
 
NC_008577  Shewana3_2071  short-chain dehydrogenase/reductase SDR  54.76 
 
 
256 aa  278  5e-74  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00640028  hitchhiker  0.00000248708 
 
 
-
 
NC_008322  Shewmr7_1990  short-chain dehydrogenase/reductase SDR  54.37 
 
 
256 aa  276  2e-73  Shewanella sp. MR-7  Bacteria  normal  0.0224708  unclonable  0.0000202886 
 
 
-
 
NC_008321  Shewmr4_1984  short-chain dehydrogenase/reductase SDR  54.37 
 
 
256 aa  275  5e-73  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00682949  normal  0.0302653 
 
 
-
 
NC_011365  Gdia_0389  short-chain dehydrogenase/reductase SDR  56.54 
 
 
261 aa  274  9e-73  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.132836  normal  0.554145 
 
 
-
 
NC_010508  Bcenmc03_0592  short-chain dehydrogenase/reductase SDR  58.15 
 
 
271 aa  274  1.0000000000000001e-72  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0410788 
 
 
-
 
NC_008060  Bcen_0141  short-chain dehydrogenase/reductase SDR  58.15 
 
 
271 aa  274  1.0000000000000001e-72  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0624  short-chain dehydrogenase/reductase SDR  58.15 
 
 
271 aa  274  1.0000000000000001e-72  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0853252  n/a   
 
 
-
 
NC_007912  Sde_0771  GntR family transcriptional regulator  54.69 
 
 
256 aa  270  1e-71  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00515913  normal  0.0552536 
 
 
-
 
NC_011663  Sbal223_2145  short-chain dehydrogenase/reductase SDR  51.59 
 
 
256 aa  267  1e-70  Shewanella baltica OS223  Bacteria  normal  0.0597739  normal  0.690345 
 
 
-
 
NC_009438  Sputcn32_2061  short-chain dehydrogenase/reductase SDR  52 
 
 
256 aa  267  2e-70  Shewanella putrefaciens CN-32  Bacteria  normal  0.138185  n/a   
 
 
-
 
NC_012560  Avin_51440  Short-chain dehydrogenase/reductase (SDR) family protein  55.82 
 
 
260 aa  258  9e-68  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_5401  short-chain dehydrogenase/reductase SDR  54.4 
 
 
258 aa  254  1.0000000000000001e-66  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_1041  short-chain dehydrogenase/reductase SDR  50.6 
 
 
258 aa  251  1e-65  Variovorax paradoxus S110  Bacteria  normal  0.208357  n/a   
 
 
-
 
NC_007912  Sde_0761  putative oxidoreductase  49.6 
 
 
255 aa  249  2e-65  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.429001 
 
 
-
 
NC_007802  Jann_2374  short-chain dehydrogenase/reductase SDR  53.04 
 
 
251 aa  247  1e-64  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0735  short-chain dehydrogenase/reductase SDR  53.6 
 
 
270 aa  246  4e-64  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.304096  normal 
 
 
-
 
NC_009484  Acry_2599  short-chain dehydrogenase/reductase SDR  49 
 
 
257 aa  235  5.0000000000000005e-61  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C1363  D-xylose dehydrogenase  49.8 
 
 
268 aa  234  1.0000000000000001e-60  Burkholderia xenovorans LB400  Bacteria  normal  0.879722  normal  0.999685 
 
 
-
 
NC_008752  Aave_2258  short-chain dehydrogenase/reductase SDR  49.42 
 
 
271 aa  232  5e-60  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0225727  hitchhiker  0.000000282328 
 
 
-
 
NC_010678  Rpic_4077  short-chain dehydrogenase/reductase SDR  51.41 
 
 
255 aa  226  3e-58  Ralstonia pickettii 12J  Bacteria  normal  0.13973  normal 
 
 
-
 
NC_012857  Rpic12D_4189  short-chain dehydrogenase/reductase SDR  51.41 
 
 
255 aa  226  3e-58  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0941  short-chain dehydrogenase/reductase SDR  49.4 
 
 
251 aa  224  1e-57  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.995863 
 
 
-
 
NC_009654  Mmwyl1_0516  short-chain dehydrogenase/reductase SDR  47.27 
 
 
254 aa  219  3e-56  Marinomonas sp. MWYL1  Bacteria  normal  0.098133  normal 
 
 
-
 
NC_010338  Caul_4001  short-chain dehydrogenase/reductase SDR  46.46 
 
 
259 aa  215  7e-55  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_1243  short-chain dehydrogenase/reductase SDR  50.21 
 
 
258 aa  213  2.9999999999999995e-54  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.455666  normal  0.236793 
 
 
-
 
NC_008043  TM1040_3488  short-chain dehydrogenase/reductase SDR  45.87 
 
 
256 aa  210  2e-53  Ruegeria sp. TM1040  Bacteria  normal  normal  0.742718 
 
 
-
 
NC_008254  Meso_3587  short-chain dehydrogenase/reductase SDR  45.85 
 
 
255 aa  207  1e-52  Chelativorans sp. BNC1  Bacteria  normal  0.435673  n/a   
 
 
-
 
NC_007802  Jann_3834  short-chain dehydrogenase/reductase SDR  43.72 
 
 
256 aa  206  2e-52  Jannaschia sp. CCS1  Bacteria  normal  0.140905  normal 
 
 
-
 
NC_007493  RSP_1369  Short-chain dehydrogenase/reductase SDR  49.8 
 
 
260 aa  202  3e-51  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0037  short-chain dehydrogenase/reductase SDR  49.39 
 
 
260 aa  202  6e-51  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_1729  D-xylose dehydrogenase  47.39 
 
 
245 aa  199  3e-50  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.380531  n/a   
 
 
-
 
NC_008228  Patl_3529  short-chain dehydrogenase/reductase SDR  41.44 
 
 
270 aa  197  1.0000000000000001e-49  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0027  short-chain dehydrogenase/reductase SDR  48.99 
 
 
288 aa  196  3e-49  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3666  short-chain dehydrogenase/reductase SDR  42.86 
 
 
255 aa  187  1e-46  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00136979  normal 
 
 
-
 
NC_012850  Rleg_0546  short-chain dehydrogenase/reductase SDR  48.19 
 
 
257 aa  186  2e-46  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
BN001304  ANIA_07128  conserved hypothetical protein  39.41 
 
 
275 aa  184  1.0000000000000001e-45  Aspergillus nidulans FGSC A4  Eukaryota  hitchhiker  0.00131023  normal  0.0770254 
 
 
-
 
NC_011369  Rleg2_0503  short-chain dehydrogenase/reductase SDR  46.99 
 
 
253 aa  184  1.0000000000000001e-45  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_0438  short-chain dehydrogenase/reductase SDR  42.63 
 
 
256 aa  179  5.999999999999999e-44  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.285603 
 
 
-
 
NC_011737  PCC7424_5536  short-chain dehydrogenase/reductase SDR  36.36 
 
 
254 aa  145  7.0000000000000006e-34  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0819159 
 
 
-
 
NC_013595  Sros_1990  short-chain dehydrogenase/reductase SDR  34.41 
 
 
249 aa  140  3e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1429  short-chain dehydrogenase/reductase SDR  37.01 
 
 
256 aa  139  6e-32  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009427  Saro_3667  short-chain dehydrogenase/reductase SDR  37.7 
 
 
259 aa  139  6e-32  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1241  short-chain dehydrogenase/reductase SDR  37.3 
 
 
260 aa  139  7e-32  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0407787  normal  0.415093 
 
 
-
 
NC_013510  Tcur_3357  short-chain dehydrogenase/reductase SDR  35.74 
 
 
253 aa  138  1e-31  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00078495  n/a   
 
 
-
 
NC_013757  Gobs_1834  short-chain dehydrogenase/reductase SDR  34.26 
 
 
252 aa  137  2e-31  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2067  short-chain dehydrogenase/reductase SDR  36.07 
 
 
246 aa  137  2e-31  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3804  short-chain dehydrogenase/reductase SDR  37.14 
 
 
253 aa  134  9.999999999999999e-31  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_3000  short-chain dehydrogenase/reductase SDR  36.07 
 
 
248 aa  134  9.999999999999999e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.767749  normal  0.280666 
 
 
-
 
NC_013744  Htur_4226  short-chain dehydrogenase/reductase SDR  35.46 
 
 
255 aa  134  9.999999999999999e-31  Haloterrigena turkmenica DSM 5511  Archaea  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_0909  short-chain dehydrogenase/reductase SDR  34.96 
 
 
244 aa  133  1.9999999999999998e-30  Psychrobacter sp. PRwf-1  Bacteria  normal  0.271894  normal 
 
 
-
 
NC_009338  Mflv_3281  short-chain dehydrogenase/reductase SDR  36.07 
 
 
248 aa  134  1.9999999999999998e-30  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.846295 
 
 
-
 
NC_012669  Bcav_2143  short-chain dehydrogenase/reductase SDR  37.5 
 
 
251 aa  134  1.9999999999999998e-30  Beutenbergia cavernae DSM 12333  Bacteria  decreased coverage  0.00162277  normal 
 
 
-
 
NC_007794  Saro_0512  short-chain dehydrogenase/reductase SDR  37.3 
 
 
248 aa  133  3.9999999999999996e-30  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4479  short-chain dehydrogenase/reductase SDR  36.55 
 
 
260 aa  132  3.9999999999999996e-30  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_1173  short-chain dehydrogenase/reductase SDR  34.26 
 
 
256 aa  131  7.999999999999999e-30  Clostridium cellulolyticum H10  Bacteria  normal  0.0283651  n/a   
 
 
-
 
NC_013922  Nmag_1308  short-chain dehydrogenase/reductase SDR  33.6 
 
 
257 aa  131  1.0000000000000001e-29  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0541  short-chain dehydrogenase/reductase SDR  35.89 
 
 
251 aa  131  1.0000000000000001e-29  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B1012  Short-chain dehydrogenase/reductase SDR  34.82 
 
 
251 aa  129  4.0000000000000003e-29  Burkholderia sp. 383  Bacteria  normal  0.0198691  normal  0.370278 
 
 
-
 
NC_012791  Vapar_3308  short-chain dehydrogenase/reductase SDR  40.8 
 
 
249 aa  129  4.0000000000000003e-29  Variovorax paradoxus S110  Bacteria  normal  0.616941  n/a   
 
 
-
 
NC_008752  Aave_2790  short-chain dehydrogenase/reductase SDR  36.36 
 
 
269 aa  129  4.0000000000000003e-29  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_2818  short chain dehydrogenase  38.46 
 
 
256 aa  129  5.0000000000000004e-29  Mycobacterium sp. JLS  Bacteria  normal  0.101264  normal 
 
 
-
 
NC_010003  Pmob_0729  short-chain dehydrogenase/reductase SDR  34.29 
 
 
251 aa  129  5.0000000000000004e-29  Petrotoga mobilis SJ95  Bacteria  normal  0.0262547  n/a   
 
 
-
 
NC_008146  Mmcs_2791  short chain dehydrogenase  38.46 
 
 
256 aa  129  5.0000000000000004e-29  Mycobacterium sp. MCS  Bacteria  normal  0.298424  n/a   
 
 
-
 
NC_008705  Mkms_2835  short chain dehydrogenase  38.46 
 
 
256 aa  129  5.0000000000000004e-29  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_1022  short chain dehydrogenase  34.52 
 
 
261 aa  129  6e-29  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.917277  n/a   
 
 
-
 
NC_010623  Bphy_4948  3-ketoacyl-(acyl-carrier-protein) reductase  34.94 
 
 
250 aa  129  7.000000000000001e-29  Burkholderia phymatum STM815  Bacteria  normal  0.539161  normal 
 
 
-
 
NC_011992  Dtpsy_1869  short-chain dehydrogenase/reductase SDR  35.95 
 
 
263 aa  128  8.000000000000001e-29  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2457  short-chain dehydrogenase/reductase SDR  36.88 
 
 
265 aa  128  1.0000000000000001e-28  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1779  short-chain dehydrogenase/reductase SDR  35.08 
 
 
249 aa  127  2.0000000000000002e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009955  Dshi_3712  short-chain dehydrogenase/reductase SDR  33.47 
 
 
252 aa  127  2.0000000000000002e-28  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_4552  short-chain dehydrogenase/reductase SDR  34.29 
 
 
246 aa  127  2.0000000000000002e-28  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008697  Noca_4841  short-chain dehydrogenase/reductase SDR  36.69 
 
 
258 aa  127  2.0000000000000002e-28  Nocardioides sp. JS614  Bacteria  normal  0.166683  normal 
 
 
-
 
NC_008782  Ajs_2046  short-chain dehydrogenase/reductase SDR  35.54 
 
 
263 aa  127  3e-28  Acidovorax sp. JS42  Bacteria  decreased coverage  0.00404736  normal 
 
 
-
 
NC_009077  Mjls_2741  short-chain dehydrogenase/reductase SDR  37.08 
 
 
245 aa  126  3e-28  Mycobacterium sp. JLS  Bacteria  normal  0.67028  normal  0.072064 
 
 
-
 
NC_009505  BOV_1080  short chain dehydrogenase/reductase family oxidoreductase  34.98 
 
 
246 aa  126  3e-28  Brucella ovis ATCC 25840  Bacteria  normal  0.38691  n/a   
 
 
-
 
NC_007948  Bpro_3536  short-chain dehydrogenase/reductase SDR  35.83 
 
 
274 aa  125  5e-28  Polaromonas sp. JS666  Bacteria  normal  normal  0.446578 
 
 
-
 
NC_009767  Rcas_0104  short-chain dehydrogenase/reductase SDR  33.88 
 
 
246 aa  125  6e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.650868  normal 
 
 
-
 
NC_008146  Mmcs_2711  short-chain dehydrogenase/reductase SDR  36.67 
 
 
245 aa  125  6e-28  Mycobacterium sp. MCS  Bacteria  normal  0.561182  n/a   
 
 
-
 
NC_013525  Tter_0268  short-chain dehydrogenase/reductase SDR  35.48 
 
 
250 aa  125  6e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008705  Mkms_2755  short-chain dehydrogenase/reductase SDR  36.67 
 
 
245 aa  125  6e-28  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_5496  short-chain dehydrogenase/reductase SDR  37.9 
 
 
252 aa  125  7e-28  Variovorax paradoxus S110  Bacteria  normal  0.599678  n/a   
 
 
-
 
NC_010505  Mrad2831_3001  short-chain dehydrogenase/reductase SDR  36.99 
 
 
249 aa  125  7e-28  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
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