Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_2046 |
Symbol | |
ID | 4671948 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | + |
Start bp | 2156795 |
End bp | 2157586 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 639839124 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_986298 |
Protein GI | 121594402 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00404736 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCAAA CACTCACCAC GTCAACTATC TCCTTCGGCC ATCACGGTCG CGTGTGTATT GTCACGGGCG GTGCCCAGGG CATTGGCGAG GCCTGCGTGC GCAGGCTGGC GCGCGACGGT GCCAAGGTGG TGATCGCAGA CATGGATGAT GCCCGCGGAC GTGCTCTTGC CGATGCGGTG CCGCAAGCCG CCTACATTCA TTGCGATGTG GGCAACAAGT CCGAAGTGGA TGCCCTGGTA GGTCAAACCA TGGCGCTGCA CGGGCGCATC GACGTATTGG TCAACAACGC GGGCATCTTC CGCGCTGCGG ACTTTCTGGA TGTGACCGAG GAGGACTTCG ACGCGGTACT GCGCGTGAAC CTCAAGGGTG CCTTTCTCAT GGGCCAGGCC GTGGCACGCG AAATGGTGCG CTCGGGCGGC GGCAGCATCG TGAACATGAG TTCCGTCAAT GGCGTTTTGG CCATTCCGAA CATCGCCAGC TACAACGTGA GCAAGGGCGG CATCAATCAG CTCACCCGCG TGATGGCGCT GGCGCTGGCG GACCGTGGCA TCCGCGTGAA CGCGGTGGCG CCCGGCACCA TTGCCACGGA ACTCGCCGCG AAGGCCGTGC TGACGAGCGA CGAGGCCCGG CTCAAGATCC TGAGCCGCAC GCCGATGAAG CGCCTGGGTG AGCCTTCGGA GGTCGCTGAT GTGGTGGCAT GGCTCGCCAG CGACGCCGCC AGTTATGTGA CCGGCGAGAT CGTCACCGTG GACGGCGGCC GCATGACGCT CAACTACACC GTGCCGGTCT AG
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Protein sequence | MSQTLTTSTI SFGHHGRVCI VTGGAQGIGE ACVRRLARDG AKVVIADMDD ARGRALADAV PQAAYIHCDV GNKSEVDALV GQTMALHGRI DVLVNNAGIF RAADFLDVTE EDFDAVLRVN LKGAFLMGQA VAREMVRSGG GSIVNMSSVN GVLAIPNIAS YNVSKGGINQ LTRVMALALA DRGIRVNAVA PGTIATELAA KAVLTSDEAR LKILSRTPMK RLGEPSEVAD VVAWLASDAA SYVTGEIVTV DGGRMTLNYT VPV
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