More than 300 homologs were found in PanDaTox collection
for query gene Bamb_0525 on replicon NC_008390
Organism: Burkholderia ambifaria AMMD



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008390  Bamb_0525  short-chain dehydrogenase/reductase SDR  100 
 
 
271 aa  540  9.999999999999999e-153  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0549  short-chain dehydrogenase/reductase SDR  98.89 
 
 
270 aa  529  1e-149  Burkholderia ambifaria MC40-6  Bacteria  decreased coverage  0.00753595  normal  0.67708 
 
 
-
 
NC_007510  Bcep18194_A3706  Short-chain dehydrogenase/reductase SDR  91.88 
 
 
268 aa  491  9.999999999999999e-139  Burkholderia sp. 383  Bacteria  normal  0.283086  normal  0.654023 
 
 
-
 
NC_010508  Bcenmc03_0592  short-chain dehydrogenase/reductase SDR  86.86 
 
 
271 aa  459  9.999999999999999e-129  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0410788 
 
 
-
 
NC_008060  Bcen_0141  short-chain dehydrogenase/reductase SDR  86.86 
 
 
271 aa  459  9.999999999999999e-129  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0624  short-chain dehydrogenase/reductase SDR  86.86 
 
 
271 aa  459  9.999999999999999e-129  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0853252  n/a   
 
 
-
 
NC_010084  Bmul_2761  short-chain dehydrogenase/reductase SDR  85.98 
 
 
264 aa  456  1e-127  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.386853 
 
 
-
 
NC_009076  BURPS1106A_3483  NAD dependent epimerase/dehydratase family protein  83.01 
 
 
271 aa  427  1e-119  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2483  short chain dehydrogenase/reductase family oxidoreductase  83.01 
 
 
268 aa  427  1e-119  Burkholderia mallei ATCC 23344  Bacteria  normal  0.709099  n/a   
 
 
-
 
NC_009080  BMA10247_3302  short chain dehydrogenase/reductase family oxidoreductase  83.01 
 
 
268 aa  427  1e-119  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3480  short chain dehydrogenase/reductase family oxidoreductase  83.01 
 
 
268 aa  427  1e-119  Burkholderia pseudomallei 1710b  Bacteria  normal  0.538943  n/a   
 
 
-
 
NC_008836  BMA10229_A1263  short chain dehydrogenase/reductase family oxidoreductase  83.01 
 
 
268 aa  427  1e-119  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3445  NAD dependent epimerase/dehydratase family protein  83.01 
 
 
268 aa  427  1e-119  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0403  short chain dehydrogenase/reductase family oxidoreductase  83.01 
 
 
268 aa  427  1e-119  Burkholderia mallei SAVP1  Bacteria  normal  0.253369  n/a   
 
 
-
 
NC_007651  BTH_I1182  short chain dehydrogenase/reductase family oxidoreductase  84.67 
 
 
271 aa  422  1e-117  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3408  short-chain dehydrogenase/reductase SDR  76.36 
 
 
266 aa  404  1.0000000000000001e-112  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0359384  normal  0.0764099 
 
 
-
 
NC_007951  Bxe_A0549  putative short-chain dehydrogenase/reductase, FabG-like  76.74 
 
 
266 aa  405  1.0000000000000001e-112  Burkholderia xenovorans LB400  Bacteria  normal  0.204322  normal  0.437639 
 
 
-
 
NC_010622  Bphy_2612  short-chain dehydrogenase/reductase SDR  77.56 
 
 
266 aa  398  9.999999999999999e-111  Burkholderia phymatum STM815  Bacteria  normal  normal  0.227086 
 
 
-
 
NC_007908  Rfer_0433  short-chain dehydrogenase/reductase SDR  63.64 
 
 
254 aa  332  4e-90  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_5073  short-chain dehydrogenase/reductase SDR  59.92 
 
 
261 aa  281  9e-75  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4106  short-chain dehydrogenase/reductase SDR  54.55 
 
 
256 aa  280  1e-74  Marinomonas sp. MWYL1  Bacteria  normal  decreased coverage  0.00000000241543 
 
 
-
 
NC_007912  Sde_0771  GntR family transcriptional regulator  54.58 
 
 
256 aa  274  1.0000000000000001e-72  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00515913  normal  0.0552536 
 
 
-
 
NC_007912  Sde_0761  putative oxidoreductase  52.61 
 
 
255 aa  273  2.0000000000000002e-72  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.429001 
 
 
-
 
NC_009484  Acry_2599  short-chain dehydrogenase/reductase SDR  53.97 
 
 
257 aa  261  8.999999999999999e-69  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0389  short-chain dehydrogenase/reductase SDR  56.92 
 
 
261 aa  257  2e-67  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.132836  normal  0.554145 
 
 
-
 
NC_009438  Sputcn32_2061  short-chain dehydrogenase/reductase SDR  50.79 
 
 
256 aa  256  4e-67  Shewanella putrefaciens CN-32  Bacteria  normal  0.138185  n/a   
 
 
-
 
NC_011663  Sbal223_2145  short-chain dehydrogenase/reductase SDR  50 
 
 
256 aa  254  1.0000000000000001e-66  Shewanella baltica OS223  Bacteria  normal  0.0597739  normal  0.690345 
 
 
-
 
NC_008322  Shewmr7_1990  short-chain dehydrogenase/reductase SDR  50.4 
 
 
256 aa  254  1.0000000000000001e-66  Shewanella sp. MR-7  Bacteria  normal  0.0224708  unclonable  0.0000202886 
 
 
-
 
NC_012560  Avin_51440  Short-chain dehydrogenase/reductase (SDR) family protein  55.16 
 
 
260 aa  253  3e-66  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1984  short-chain dehydrogenase/reductase SDR  50 
 
 
256 aa  251  1e-65  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00682949  normal  0.0302653 
 
 
-
 
NC_012791  Vapar_1041  short-chain dehydrogenase/reductase SDR  52.4 
 
 
258 aa  251  1e-65  Variovorax paradoxus S110  Bacteria  normal  0.208357  n/a   
 
 
-
 
NC_008577  Shewana3_2071  short-chain dehydrogenase/reductase SDR  50 
 
 
256 aa  250  2e-65  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00640028  hitchhiker  0.00000248708 
 
 
-
 
NC_012857  Rpic12D_4189  short-chain dehydrogenase/reductase SDR  54.55 
 
 
255 aa  246  2e-64  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4077  short-chain dehydrogenase/reductase SDR  54.55 
 
 
255 aa  246  2e-64  Ralstonia pickettii 12J  Bacteria  normal  0.13973  normal 
 
 
-
 
NC_010505  Mrad2831_5401  short-chain dehydrogenase/reductase SDR  52.12 
 
 
258 aa  246  3e-64  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0735  short-chain dehydrogenase/reductase SDR  52.76 
 
 
270 aa  245  6e-64  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.304096  normal 
 
 
-
 
NC_007953  Bxe_C1363  D-xylose dehydrogenase  51.38 
 
 
268 aa  244  9.999999999999999e-64  Burkholderia xenovorans LB400  Bacteria  normal  0.879722  normal  0.999685 
 
 
-
 
NC_008254  Meso_3587  short-chain dehydrogenase/reductase SDR  51.39 
 
 
255 aa  240  2e-62  Chelativorans sp. BNC1  Bacteria  normal  0.435673  n/a   
 
 
-
 
NC_007802  Jann_2374  short-chain dehydrogenase/reductase SDR  50.2 
 
 
251 aa  234  1.0000000000000001e-60  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2258  short-chain dehydrogenase/reductase SDR  50.4 
 
 
271 aa  221  8e-57  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0225727  hitchhiker  0.000000282328 
 
 
-
 
NC_007493  RSP_1369  Short-chain dehydrogenase/reductase SDR  50 
 
 
260 aa  221  9e-57  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0037  short-chain dehydrogenase/reductase SDR  49.61 
 
 
260 aa  220  1.9999999999999999e-56  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3834  short-chain dehydrogenase/reductase SDR  46.03 
 
 
256 aa  219  3e-56  Jannaschia sp. CCS1  Bacteria  normal  0.140905  normal 
 
 
-
 
NC_009654  Mmwyl1_0516  short-chain dehydrogenase/reductase SDR  45.6 
 
 
254 aa  217  2e-55  Marinomonas sp. MWYL1  Bacteria  normal  0.098133  normal 
 
 
-
 
NC_008786  Veis_0941  short-chain dehydrogenase/reductase SDR  50.6 
 
 
251 aa  216  4e-55  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.995863 
 
 
-
 
NC_010338  Caul_4001  short-chain dehydrogenase/reductase SDR  47.04 
 
 
259 aa  214  1.9999999999999998e-54  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_1243  short-chain dehydrogenase/reductase SDR  47.98 
 
 
258 aa  213  1.9999999999999998e-54  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.455666  normal  0.236793 
 
 
-
 
NC_008043  TM1040_3488  short-chain dehydrogenase/reductase SDR  47.13 
 
 
256 aa  213  3.9999999999999995e-54  Ruegeria sp. TM1040  Bacteria  normal  normal  0.742718 
 
 
-
 
NC_009636  Smed_0438  short-chain dehydrogenase/reductase SDR  47.01 
 
 
256 aa  211  1e-53  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.285603 
 
 
-
 
NC_008228  Patl_3529  short-chain dehydrogenase/reductase SDR  45.67 
 
 
270 aa  210  2e-53  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0027  short-chain dehydrogenase/reductase SDR  50.19 
 
 
288 aa  209  4e-53  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0503  short-chain dehydrogenase/reductase SDR  49.8 
 
 
253 aa  207  2e-52  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0546  short-chain dehydrogenase/reductase SDR  49.4 
 
 
257 aa  204  1e-51  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
BN001304  ANIA_07128  conserved hypothetical protein  40.75 
 
 
275 aa  202  3e-51  Aspergillus nidulans FGSC A4  Eukaryota  hitchhiker  0.00131023  normal  0.0770254 
 
 
-
 
NC_007963  Csal_1729  D-xylose dehydrogenase  47.62 
 
 
245 aa  191  9e-48  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.380531  n/a   
 
 
-
 
NC_010506  Swoo_3666  short-chain dehydrogenase/reductase SDR  40.24 
 
 
255 aa  177  2e-43  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00136979  normal 
 
 
-
 
NC_010505  Mrad2831_3001  short-chain dehydrogenase/reductase SDR  40.64 
 
 
249 aa  145  5e-34  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011737  PCC7424_5536  short-chain dehydrogenase/reductase SDR  36.29 
 
 
254 aa  145  5e-34  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0819159 
 
 
-
 
NC_010511  M446_2746  short-chain dehydrogenase/reductase SDR  40.64 
 
 
249 aa  141  9.999999999999999e-33  Methylobacterium sp. 4-46  Bacteria  normal  0.458004  normal  0.197887 
 
 
-
 
NC_009767  Rcas_3851  short-chain dehydrogenase/reductase SDR  35.61 
 
 
256 aa  139  7e-32  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.575902  normal  0.466968 
 
 
-
 
NC_011757  Mchl_2365  short-chain dehydrogenase/reductase SDR  39.44 
 
 
249 aa  138  7.999999999999999e-32  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0450975 
 
 
-
 
NC_011894  Mnod_4381  short-chain dehydrogenase/reductase SDR  39.68 
 
 
254 aa  138  7.999999999999999e-32  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_2090  short-chain dehydrogenase/reductase SDR  39.04 
 
 
249 aa  137  2e-31  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.120513 
 
 
-
 
NC_009901  Spea_2148  short-chain dehydrogenase/reductase SDR  34.65 
 
 
247 aa  136  4e-31  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_0474  3-ketoacyl-(acyl-carrier-protein) reductase  36.33 
 
 
254 aa  134  9.999999999999999e-31  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7178  short chain dehydrogenase  37.4 
 
 
262 aa  134  1.9999999999999998e-30  Burkholderia sp. 383  Bacteria  normal  normal  0.0959368 
 
 
-
 
NC_007488  RSP_3963  Short-chain dehydrogenase/reductase SDR  36.69 
 
 
251 aa  133  3e-30  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.680971  n/a   
 
 
-
 
NC_010512  Bcenmc03_6360  short chain dehydrogenase  38.19 
 
 
262 aa  132  3.9999999999999996e-30  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6140  short-chain dehydrogenase/reductase SDR  38.25 
 
 
254 aa  132  5e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  0.601598  normal 
 
 
-
 
NC_008062  Bcen_5486  short chain dehydrogenase  38.91 
 
 
262 aa  132  5e-30  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.398056  n/a   
 
 
-
 
NC_008544  Bcen2424_6772  short chain dehydrogenase  38.91 
 
 
262 aa  132  5e-30  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.646299 
 
 
-
 
NC_012918  GM21_2843  short-chain dehydrogenase/reductase SDR  33.72 
 
 
255 aa  132  6.999999999999999e-30  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011898  Ccel_1173  short-chain dehydrogenase/reductase SDR  31.27 
 
 
256 aa  132  6.999999999999999e-30  Clostridium cellulolyticum H10  Bacteria  normal  0.0283651  n/a   
 
 
-
 
NC_010338  Caul_4827  short-chain dehydrogenase/reductase SDR  37.35 
 
 
295 aa  132  7.999999999999999e-30  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2249  Short-chain dehydrogenase/reductase SDR  33.85 
 
 
260 aa  131  1.0000000000000001e-29  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000000000113674  decreased coverage  1.89116e-19 
 
 
-
 
NC_007973  Rmet_3320  short chain dehydrogenase  36 
 
 
262 aa  131  1.0000000000000001e-29  Cupriavidus metallidurans CH34  Bacteria  normal  0.694446  normal 
 
 
-
 
NC_012034  Athe_1156  3-oxoacyl-(acyl-carrier-protein) reductase  33.2 
 
 
248 aa  130  2.0000000000000002e-29  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000000536759  n/a   
 
 
-
 
NC_007950  Bpro_5564  short-chain dehydrogenase/reductase SDR  35.51 
 
 
250 aa  130  2.0000000000000002e-29  Polaromonas sp. JS666  Bacteria  normal  0.0387947  normal 
 
 
-
 
NC_010725  Mpop_0259  short-chain dehydrogenase/reductase SDR  37.85 
 
 
249 aa  130  2.0000000000000002e-29  Methylobacterium populi BJ001  Bacteria  normal  normal  0.519285 
 
 
-
 
NC_012793  GWCH70_1779  short-chain dehydrogenase/reductase SDR  34.92 
 
 
254 aa  130  2.0000000000000002e-29  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_3782  short-chain dehydrogenase/reductase SDR  34.36 
 
 
282 aa  130  3e-29  Mycobacterium sp. JLS  Bacteria  normal  0.25135  normal 
 
 
-
 
NC_008740  Maqu_1429  short-chain dehydrogenase/reductase SDR  34.77 
 
 
256 aa  129  4.0000000000000003e-29  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0729  short-chain dehydrogenase/reductase SDR  30.77 
 
 
251 aa  129  5.0000000000000004e-29  Petrotoga mobilis SJ95  Bacteria  normal  0.0262547  n/a   
 
 
-
 
NC_013744  Htur_4226  short-chain dehydrogenase/reductase SDR  33.73 
 
 
255 aa  129  7.000000000000001e-29  Haloterrigena turkmenica DSM 5511  Archaea  normal  n/a   
 
 
-
 
NC_008146  Mmcs_3770  short-chain dehydrogenase/reductase SDR  34.36 
 
 
282 aa  129  7.000000000000001e-29  Mycobacterium sp. MCS  Bacteria  normal  0.694275  n/a   
 
 
-
 
NC_008705  Mkms_3843  short-chain dehydrogenase/reductase SDR  34.36 
 
 
282 aa  129  7.000000000000001e-29  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_6012  short chain dehydrogenase  35.29 
 
 
262 aa  128  1.0000000000000001e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.998031 
 
 
-
 
NC_009720  Xaut_1138  short-chain dehydrogenase/reductase SDR  36.95 
 
 
255 aa  127  1.0000000000000001e-28  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008392  Bamb_6308  short chain dehydrogenase  35.29 
 
 
262 aa  128  1.0000000000000001e-28  Burkholderia ambifaria AMMD  Bacteria  normal  0.435974  normal  0.367823 
 
 
-
 
NC_008697  Noca_4841  short-chain dehydrogenase/reductase SDR  33.07 
 
 
258 aa  128  1.0000000000000001e-28  Nocardioides sp. JS614  Bacteria  normal  0.166683  normal 
 
 
-
 
NC_007794  Saro_1560  short-chain dehydrogenase/reductase SDR  37.5 
 
 
257 aa  127  2.0000000000000002e-28  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0890906  n/a   
 
 
-
 
NC_010551  BamMC406_1208  short-chain dehydrogenase/reductase SDR  35.94 
 
 
260 aa  127  2.0000000000000002e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_1834  short-chain dehydrogenase/reductase SDR  32.28 
 
 
252 aa  127  2.0000000000000002e-28  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3357  short-chain dehydrogenase/reductase SDR  34.8 
 
 
253 aa  127  2.0000000000000002e-28  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00078495  n/a   
 
 
-
 
NC_011898  Ccel_2089  short-chain dehydrogenase/reductase SDR  32.52 
 
 
246 aa  127  3e-28  Clostridium cellulolyticum H10  Bacteria  normal  0.0163129  n/a   
 
 
-
 
NC_013501  Rmar_2801  3-oxoacyl-(acyl-carrier-protein) reductase  37.45 
 
 
249 aa  126  3e-28  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2100  short-chain dehydrogenase/reductase SDR  33.6 
 
 
250 aa  126  3e-28  Acidovorax sp. JS42  Bacteria  normal  0.0527344  normal 
 
 
-
 
NC_008391  Bamb_4102  short chain dehydrogenase  34.24 
 
 
256 aa  126  3e-28  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.188504 
 
 
-
 
NC_009524  PsycPRwf_0909  short-chain dehydrogenase/reductase SDR  32.26 
 
 
244 aa  126  4.0000000000000003e-28  Psychrobacter sp. PRwf-1  Bacteria  normal  0.271894  normal 
 
 
-
 
NC_007511  Bcep18194_B2225  Short-chain dehydrogenase/reductase SDR  34.08 
 
 
267 aa  126  4.0000000000000003e-28  Burkholderia sp. 383  Bacteria  normal  normal  0.801106 
 
 
-
 
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