| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_2089 |
|---|
| Symbol | |
|---|
| ID | 7310790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | - |
|---|
| Start bp | 2447683 |
|---|
| End bp | 2448423 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643609023 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_002506414 |
|---|
| Protein GI | 220929505 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0163129 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATACCC AAAAAACTGT CCTTGTTACG GGGGCTTCAA GAGGGATAGG ATATGCTGTC
GCAAAGAAGT TTGCCAAAAA TGGATTTAAT GTTGCAATAA ACTATAACCT AAACAGCACC
TCTGCGGAAA GTCTGGAAAG CGAGTTAAGC CGGGAACAAT GCAGAGTAAT GACTGTAAAA
GCTGACGTAA GCAGTCAGGA GCAGGTACTT AATATGATAG ATAGTGTTAA CTCACGTTTC
GGTCATATAG ACATACTGGT CAATAATGCA GGAATAGCGG GACAGAGGCT GTTTACAGAT
ATTACATCAG AAGAATGGGA CAGGATGTTT GATGTTAATG TGAAAGGGAT GTTTCACTGC
TGTAAAGCTG TACTTCCAAA TATGATAAGA AATAAATACG GAAAAATAGT TAATATATCC
TCTATATGGG GATTAACAGG TGCATCATGT GAGGTTCATT ACTCGGCTTC AAAGGCAGCG
GTTATAGGAT TGACACGGGC ATTAGCAAAG GAATTGGGTC CATCCAATAT TCAGGTCAAC
TGTGTTGCAC CCGGTGTAAT TGAAACCGAT ATGAATTCGG AGATTGACAA CCAAACCATG
GAAGAGCTGA AAGAGCAGAC GCCGCTGGGG GTAATTGGCA CCGGTGATGA TATTGCAGAA
ACTGTTTTTT TCCTTGCATC AGACAGTGCC AAGTTTATAA CGGGGCAGAT TATAAGCCCA
AACGGCGGTT TTTTAATATA G
|
|---|
| Protein sequence | MNTQKTVLVT GASRGIGYAV AKKFAKNGFN VAINYNLNST SAESLESELS REQCRVMTVK
ADVSSQEQVL NMIDSVNSRF GHIDILVNNA GIAGQRLFTD ITSEEWDRMF DVNVKGMFHC
CKAVLPNMIR NKYGKIVNIS SIWGLTGASC EVHYSASKAA VIGLTRALAK ELGPSNIQVN
CVAPGVIETD MNSEIDNQTM EELKEQTPLG VIGTGDDIAE TVFFLASDSA KFITGQIISP
NGGFLI
|
|---|
| |