| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3851 |
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| Symbol | |
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| ID | 5541355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5033741 |
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| End bp | 5034511 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640895961 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001433906 |
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| Protein GI | 156743777 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.575902 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.466968 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACTGT GCGGCAAAGT AACGCTGATC ACCGGCGGCG CGACAGGTAT TGGGGCAGCA
TGCGCGCGCC GCTTCGCCGA TGAAGGCGCC CATGTGGTGA TCGCCGATAT TAACGAGCAG
GCCGGACGCC GCACGGCTGA GGTCTGTGGC GGACGCTTCG TGACGACCGA CATCGGGAAT
GCCGAACAGT GTCGCGCAGC GGTTGAAGAA ACCGTCGCCT GCTATGGACG CCTCGATATT
CTCGTCAACA CCGCCGCGCA CCTGGGAGGC TATCACGATG CCGCAGCCAT GACGCTCGAA
GAGTGGCACG CTGTGCTTGC CGTGACCCTT GATGGCGTCT TTTACTGCTC GAAATATGCG
GTTCAGGAGA TGCTCAAAAC TGGCGGCGGC GCGATTGTCA TCATCGCGTC GGTCGAGGGC
ATGATGGGCG CCGCCGGTCA TGCCGCATAT GTGACAGCGA AGAGCGCATT GTTCGGACTG
ACGCGATCTC TGGCCATCGA TTTCGGCAAG AGCGGCGTTC GCGTCAATGC CATCAGTCCT
GGCATCATCG ATTCAGGGCA GCCTGATATT GAGCGACTGA AACACGATCC GGACATCATG
CGCTTCTGGC GTGATATGAC GGTGCTGGAT CGCATGGGAC GACCGGAAGA GGTCGCAGCA
GCGGCGCTCT TCCTGGCTTC CGATGAGGCT TCGTATATCA CCGGTCAGAA CCTGGCAGTC
GACGGCGGCT GGACAATTGG ACATCCGCCG CTGCCGCGTT CGTTCCAGTA A
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| Protein sequence | MRLCGKVTLI TGGATGIGAA CARRFADEGA HVVIADINEQ AGRRTAEVCG GRFVTTDIGN
AEQCRAAVEE TVACYGRLDI LVNTAAHLGG YHDAAAMTLE EWHAVLAVTL DGVFYCSKYA
VQEMLKTGGG AIVIIASVEG MMGAAGHAAY VTAKSALFGL TRSLAIDFGK SGVRVNAISP
GIIDSGQPDI ERLKHDPDIM RFWRDMTVLD RMGRPEEVAA AALFLASDEA SYITGQNLAV
DGGWTIGHPP LPRSFQ
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