Gene Rcas_3851 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3851 
Symbol 
ID5541355 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5033741 
End bp5034511 
Gene Length771 bp 
Protein Length256 aa 
Translation table11 
GC content61% 
IMG OID640895961 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001433906 
Protein GI156743777 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.575902 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.466968 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGACTGT GCGGCAAAGT AACGCTGATC ACCGGCGGCG CGACAGGTAT TGGGGCAGCA 
TGCGCGCGCC GCTTCGCCGA TGAAGGCGCC CATGTGGTGA TCGCCGATAT TAACGAGCAG
GCCGGACGCC GCACGGCTGA GGTCTGTGGC GGACGCTTCG TGACGACCGA CATCGGGAAT
GCCGAACAGT GTCGCGCAGC GGTTGAAGAA ACCGTCGCCT GCTATGGACG CCTCGATATT
CTCGTCAACA CCGCCGCGCA CCTGGGAGGC TATCACGATG CCGCAGCCAT GACGCTCGAA
GAGTGGCACG CTGTGCTTGC CGTGACCCTT GATGGCGTCT TTTACTGCTC GAAATATGCG
GTTCAGGAGA TGCTCAAAAC TGGCGGCGGC GCGATTGTCA TCATCGCGTC GGTCGAGGGC
ATGATGGGCG CCGCCGGTCA TGCCGCATAT GTGACAGCGA AGAGCGCATT GTTCGGACTG
ACGCGATCTC TGGCCATCGA TTTCGGCAAG AGCGGCGTTC GCGTCAATGC CATCAGTCCT
GGCATCATCG ATTCAGGGCA GCCTGATATT GAGCGACTGA AACACGATCC GGACATCATG
CGCTTCTGGC GTGATATGAC GGTGCTGGAT CGCATGGGAC GACCGGAAGA GGTCGCAGCA
GCGGCGCTCT TCCTGGCTTC CGATGAGGCT TCGTATATCA CCGGTCAGAA CCTGGCAGTC
GACGGCGGCT GGACAATTGG ACATCCGCCG CTGCCGCGTT CGTTCCAGTA A
 
Protein sequence
MRLCGKVTLI TGGATGIGAA CARRFADEGA HVVIADINEQ AGRRTAEVCG GRFVTTDIGN 
AEQCRAAVEE TVACYGRLDI LVNTAAHLGG YHDAAAMTLE EWHAVLAVTL DGVFYCSKYA
VQEMLKTGGG AIVIIASVEG MMGAAGHAAY VTAKSALFGL TRSLAIDFGK SGVRVNAISP
GIIDSGQPDI ERLKHDPDIM RFWRDMTVLD RMGRPEEVAA AALFLASDEA SYITGQNLAV
DGGWTIGHPP LPRSFQ