More than 300 homologs were found in PanDaTox collection
for query gene Mrad2831_5401 on replicon NC_010505
Organism: Methylobacterium radiotolerans JCM 2831



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010505  Mrad2831_5401  short-chain dehydrogenase/reductase SDR  100 
 
 
258 aa  514  1.0000000000000001e-145  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_4001  short-chain dehydrogenase/reductase SDR  66.4 
 
 
259 aa  321  6e-87  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0941  short-chain dehydrogenase/reductase SDR  63.86 
 
 
251 aa  310  2e-83  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.995863 
 
 
-
 
NC_007953  Bxe_C1363  D-xylose dehydrogenase  57.87 
 
 
268 aa  287  1e-76  Burkholderia xenovorans LB400  Bacteria  normal  0.879722  normal  0.999685 
 
 
-
 
NC_007963  Csal_1729  D-xylose dehydrogenase  60.64 
 
 
245 aa  283  2.0000000000000002e-75  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.380531  n/a   
 
 
-
 
NC_010678  Rpic_4077  short-chain dehydrogenase/reductase SDR  56 
 
 
255 aa  266  2.9999999999999995e-70  Ralstonia pickettii 12J  Bacteria  normal  0.13973  normal 
 
 
-
 
NC_012857  Rpic12D_4189  short-chain dehydrogenase/reductase SDR  56 
 
 
255 aa  266  2.9999999999999995e-70  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_2599  short-chain dehydrogenase/reductase SDR  53.2 
 
 
257 aa  263  2e-69  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0771  GntR family transcriptional regulator  53.2 
 
 
256 aa  262  3e-69  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00515913  normal  0.0552536 
 
 
-
 
NC_007912  Sde_0761  putative oxidoreductase  52.23 
 
 
255 aa  261  1e-68  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.429001 
 
 
-
 
NC_010084  Bmul_2761  short-chain dehydrogenase/reductase SDR  55.2 
 
 
264 aa  258  7e-68  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.386853 
 
 
-
 
NC_006348  BMA2483  short chain dehydrogenase/reductase family oxidoreductase  53.52 
 
 
268 aa  257  1e-67  Burkholderia mallei ATCC 23344  Bacteria  normal  0.709099  n/a   
 
 
-
 
NC_008836  BMA10229_A1263  short chain dehydrogenase/reductase family oxidoreductase  53.52 
 
 
268 aa  257  1e-67  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3302  short chain dehydrogenase/reductase family oxidoreductase  53.52 
 
 
268 aa  257  1e-67  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3480  short chain dehydrogenase/reductase family oxidoreductase  53.52 
 
 
268 aa  257  1e-67  Burkholderia pseudomallei 1710b  Bacteria  normal  0.538943  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0403  short chain dehydrogenase/reductase family oxidoreductase  53.52 
 
 
268 aa  257  1e-67  Burkholderia mallei SAVP1  Bacteria  normal  0.253369  n/a   
 
 
-
 
NC_009074  BURPS668_3445  NAD dependent epimerase/dehydratase family protein  53.52 
 
 
268 aa  257  1e-67  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3483  NAD dependent epimerase/dehydratase family protein  53.52 
 
 
271 aa  257  1e-67  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0549  putative short-chain dehydrogenase/reductase, FabG-like  51.6 
 
 
266 aa  251  6e-66  Burkholderia xenovorans LB400  Bacteria  normal  0.204322  normal  0.437639 
 
 
-
 
NC_010681  Bphyt_3408  short-chain dehydrogenase/reductase SDR  50.8 
 
 
266 aa  249  3e-65  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0359384  normal  0.0764099 
 
 
-
 
NC_008390  Bamb_0525  short-chain dehydrogenase/reductase SDR  52.12 
 
 
271 aa  249  3e-65  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3706  Short-chain dehydrogenase/reductase SDR  52.53 
 
 
268 aa  248  7e-65  Burkholderia sp. 383  Bacteria  normal  0.283086  normal  0.654023 
 
 
-
 
NC_012791  Vapar_5073  short-chain dehydrogenase/reductase SDR  53.78 
 
 
261 aa  247  1e-64  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1182  short chain dehydrogenase/reductase family oxidoreductase  52.53 
 
 
271 aa  245  6e-64  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0592  short-chain dehydrogenase/reductase SDR  53.31 
 
 
271 aa  243  1.9999999999999999e-63  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0410788 
 
 
-
 
NC_008060  Bcen_0141  short-chain dehydrogenase/reductase SDR  53.31 
 
 
271 aa  243  1.9999999999999999e-63  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0624  short-chain dehydrogenase/reductase SDR  53.31 
 
 
271 aa  243  1.9999999999999999e-63  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0853252  n/a   
 
 
-
 
NC_010551  BamMC406_0549  short-chain dehydrogenase/reductase SDR  51.35 
 
 
270 aa  242  5e-63  Burkholderia ambifaria MC40-6  Bacteria  decreased coverage  0.00753595  normal  0.67708 
 
 
-
 
NC_010622  Bphy_2612  short-chain dehydrogenase/reductase SDR  50 
 
 
266 aa  238  6.999999999999999e-62  Burkholderia phymatum STM815  Bacteria  normal  normal  0.227086 
 
 
-
 
NC_011663  Sbal223_2145  short-chain dehydrogenase/reductase SDR  46 
 
 
256 aa  237  2e-61  Shewanella baltica OS223  Bacteria  normal  0.0597739  normal  0.690345 
 
 
-
 
NC_012791  Vapar_1041  short-chain dehydrogenase/reductase SDR  49.21 
 
 
258 aa  236  3e-61  Variovorax paradoxus S110  Bacteria  normal  0.208357  n/a   
 
 
-
 
NC_008321  Shewmr4_1984  short-chain dehydrogenase/reductase SDR  45.6 
 
 
256 aa  236  3e-61  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00682949  normal  0.0302653 
 
 
-
 
NC_007908  Rfer_0433  short-chain dehydrogenase/reductase SDR  47.6 
 
 
254 aa  234  8e-61  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2071  short-chain dehydrogenase/reductase SDR  45.6 
 
 
256 aa  234  8e-61  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00640028  hitchhiker  0.00000248708 
 
 
-
 
NC_008786  Veis_0735  short-chain dehydrogenase/reductase SDR  51.6 
 
 
270 aa  233  2.0000000000000002e-60  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.304096  normal 
 
 
-
 
NC_011365  Gdia_0389  short-chain dehydrogenase/reductase SDR  53.6 
 
 
261 aa  233  3e-60  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.132836  normal  0.554145 
 
 
-
 
NC_008322  Shewmr7_1990  short-chain dehydrogenase/reductase SDR  45.2 
 
 
256 aa  231  6e-60  Shewanella sp. MR-7  Bacteria  normal  0.0224708  unclonable  0.0000202886 
 
 
-
 
NC_009654  Mmwyl1_0516  short-chain dehydrogenase/reductase SDR  46.64 
 
 
254 aa  226  3e-58  Marinomonas sp. MWYL1  Bacteria  normal  0.098133  normal 
 
 
-
 
NC_009438  Sputcn32_2061  short-chain dehydrogenase/reductase SDR  44 
 
 
256 aa  226  4e-58  Shewanella putrefaciens CN-32  Bacteria  normal  0.138185  n/a   
 
 
-
 
NC_007802  Jann_2374  short-chain dehydrogenase/reductase SDR  50 
 
 
251 aa  224  1e-57  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2258  short-chain dehydrogenase/reductase SDR  51.21 
 
 
271 aa  221  9e-57  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0225727  hitchhiker  0.000000282328 
 
 
-
 
NC_009654  Mmwyl1_4106  short-chain dehydrogenase/reductase SDR  42.46 
 
 
256 aa  214  9.999999999999999e-55  Marinomonas sp. MWYL1  Bacteria  normal  decreased coverage  0.00000000241543 
 
 
-
 
NC_008254  Meso_3587  short-chain dehydrogenase/reductase SDR  47.79 
 
 
255 aa  213  2.9999999999999995e-54  Chelativorans sp. BNC1  Bacteria  normal  0.435673  n/a   
 
 
-
 
NC_008228  Patl_3529  short-chain dehydrogenase/reductase SDR  44.58 
 
 
270 aa  212  3.9999999999999995e-54  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3488  short-chain dehydrogenase/reductase SDR  44.9 
 
 
256 aa  210  2e-53  Ruegeria sp. TM1040  Bacteria  normal  normal  0.742718 
 
 
-
 
BN001304  ANIA_07128  conserved hypothetical protein  43.4 
 
 
275 aa  208  6e-53  Aspergillus nidulans FGSC A4  Eukaryota  hitchhiker  0.00131023  normal  0.0770254 
 
 
-
 
NC_009952  Dshi_1243  short-chain dehydrogenase/reductase SDR  47.95 
 
 
258 aa  208  6e-53  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.455666  normal  0.236793 
 
 
-
 
NC_010506  Swoo_3666  short-chain dehydrogenase/reductase SDR  45.49 
 
 
255 aa  208  6e-53  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00136979  normal 
 
 
-
 
NC_009636  Smed_0438  short-chain dehydrogenase/reductase SDR  47.79 
 
 
256 aa  204  2e-51  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.285603 
 
 
-
 
NC_007802  Jann_3834  short-chain dehydrogenase/reductase SDR  42.57 
 
 
256 aa  201  9.999999999999999e-51  Jannaschia sp. CCS1  Bacteria  normal  0.140905  normal 
 
 
-
 
NC_012560  Avin_51440  Short-chain dehydrogenase/reductase (SDR) family protein  45.42 
 
 
260 aa  197  2.0000000000000003e-49  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_1369  Short-chain dehydrogenase/reductase SDR  45.91 
 
 
260 aa  192  4e-48  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0037  short-chain dehydrogenase/reductase SDR  45.91 
 
 
260 aa  191  1e-47  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0027  short-chain dehydrogenase/reductase SDR  48.99 
 
 
288 aa  188  5.999999999999999e-47  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0503  short-chain dehydrogenase/reductase SDR  46.18 
 
 
253 aa  186  2e-46  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0546  short-chain dehydrogenase/reductase SDR  45.38 
 
 
257 aa  184  2.0000000000000003e-45  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011737  PCC7424_5536  short-chain dehydrogenase/reductase SDR  39.2 
 
 
254 aa  159  5e-38  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0819159 
 
 
-
 
NC_008148  Rxyl_0541  short-chain dehydrogenase/reductase SDR  36.99 
 
 
251 aa  144  1e-33  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_3000  short-chain dehydrogenase/reductase SDR  37.34 
 
 
248 aa  141  9.999999999999999e-33  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.767749  normal  0.280666 
 
 
-
 
NC_009667  Oant_2067  short-chain dehydrogenase/reductase SDR  35.39 
 
 
246 aa  140  1.9999999999999998e-32  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B1106  short chain dehydrogenase  38.19 
 
 
256 aa  140  3e-32  Burkholderia sp. 383  Bacteria  normal  0.179926  normal  0.355646 
 
 
-
 
NC_007953  Bxe_C0357  putative short-chain dehydrogenase  38.25 
 
 
246 aa  139  3e-32  Burkholderia xenovorans LB400  Bacteria  normal  0.0963856  hitchhiker  0.00000797271 
 
 
-
 
NC_014158  Tpau_3804  short-chain dehydrogenase/reductase SDR  40 
 
 
253 aa  139  3e-32  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1500  short chain dehydrogenase  38.31 
 
 
256 aa  137  2e-31  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0863  short-chain dehydrogenase/reductase SDR  36.11 
 
 
264 aa  137  2e-31  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_011892  Mnod_8333  short-chain dehydrogenase/reductase SDR  36.44 
 
 
257 aa  137  2e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.319832  n/a   
 
 
-
 
NC_008148  Rxyl_3011  short-chain dehydrogenase/reductase SDR  36.29 
 
 
251 aa  136  3.0000000000000003e-31  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4102  short chain dehydrogenase  38.31 
 
 
256 aa  136  3.0000000000000003e-31  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.188504 
 
 
-
 
NC_010086  Bmul_3985  short chain dehydrogenase  38.19 
 
 
256 aa  135  4e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.473882  normal  0.0186737 
 
 
-
 
NC_009338  Mflv_3281  short-chain dehydrogenase/reductase SDR  36.51 
 
 
248 aa  136  4e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.846295 
 
 
-
 
NC_004310  BR1122  short chain dehydrogenase/reductase family oxidoreductase  35.95 
 
 
246 aa  135  5e-31  Brucella suis 1330  Bacteria  normal  0.0726405  n/a   
 
 
-
 
NC_008061  Bcen_3659  short chain dehydrogenase  37.9 
 
 
256 aa  135  5e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.821403  n/a   
 
 
-
 
NC_008543  Bcen2424_4708  short chain dehydrogenase  37.9 
 
 
256 aa  135  5e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  0.978516  normal  0.14883 
 
 
-
 
NC_010515  Bcenmc03_5592  short chain dehydrogenase  37.9 
 
 
256 aa  135  5e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0383111 
 
 
-
 
NC_009075  BURPS668_A1308  short chain dehydrogenase  39.11 
 
 
256 aa  135  7.000000000000001e-31  Burkholderia pseudomallei 668  Bacteria  normal  0.480054  n/a   
 
 
-
 
NC_010338  Caul_0527  short-chain dehydrogenase/reductase SDR  36.89 
 
 
277 aa  135  8e-31  Caulobacter sp. K31  Bacteria  normal  0.281211  normal 
 
 
-
 
NC_007794  Saro_0512  short-chain dehydrogenase/reductase SDR  38.19 
 
 
248 aa  135  8e-31  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_1080  short chain dehydrogenase/reductase family oxidoreductase  35.95 
 
 
246 aa  134  9.999999999999999e-31  Brucella ovis ATCC 25840  Bacteria  normal  0.38691  n/a   
 
 
-
 
NC_010552  BamMC406_4567  short chain dehydrogenase  37.9 
 
 
256 aa  134  9.999999999999999e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  0.16205  hitchhiker  0.000267636 
 
 
-
 
NC_006349  BMAA1335  short chain dehydrogenase  39.11 
 
 
256 aa  134  1.9999999999999998e-30  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2495  short chain dehydrogenase  39.11 
 
 
256 aa  134  1.9999999999999998e-30  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_1738  3-ketoacyl-(acyl-carrier-protein) reductase  38.15 
 
 
264 aa  134  1.9999999999999998e-30  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008835  BMA10229_0594  short chain dehydrogenase  39.11 
 
 
256 aa  134  1.9999999999999998e-30  Burkholderia mallei NCTC 10229  Bacteria  normal  0.512344  n/a   
 
 
-
 
NC_009079  BMA10247_A0973  short chain dehydrogenase  39.11 
 
 
256 aa  134  1.9999999999999998e-30  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_1757  3-ketoacyl-(acyl-carrier-protein) reductase  38.15 
 
 
264 aa  134  1.9999999999999998e-30  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1235  short chain dehydrogenase  39.11 
 
 
256 aa  134  1.9999999999999998e-30  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0318  short chain dehydrogenase  39.11 
 
 
256 aa  134  1.9999999999999998e-30  Burkholderia mallei SAVP1  Bacteria  normal  0.594764  n/a   
 
 
-
 
NC_009972  Haur_2059  short-chain dehydrogenase/reductase SDR  35.39 
 
 
252 aa  134  1.9999999999999998e-30  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1804  3-ketoacyl-(acyl-carrier-protein) reductase  38.15 
 
 
264 aa  134  1.9999999999999998e-30  Mycobacterium sp. KMS  Bacteria  normal  normal  0.390803 
 
 
-
 
NC_010003  Pmob_0729  short-chain dehydrogenase/reductase SDR  33.06 
 
 
251 aa  134  1.9999999999999998e-30  Petrotoga mobilis SJ95  Bacteria  normal  0.0262547  n/a   
 
 
-
 
NC_009427  Saro_3667  short-chain dehydrogenase/reductase SDR  36.48 
 
 
259 aa  132  5e-30  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2921  dehydrogenase  36.59 
 
 
261 aa  132  5e-30  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.932836 
 
 
-
 
NC_011206  Lferr_1879  short-chain dehydrogenase/reductase SDR  34.55 
 
 
261 aa  132  6.999999999999999e-30  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.828765 
 
 
-
 
NC_011761  AFE_2225  glucose 1-dehydrogenase, putative  34.55 
 
 
261 aa  132  6.999999999999999e-30  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1990  short-chain dehydrogenase/reductase SDR  34.27 
 
 
249 aa  131  7.999999999999999e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007336  Reut_C6036  NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR  36.43 
 
 
254 aa  131  9e-30  Ralstonia eutropha JMP134  Bacteria  normal  0.0528417  n/a   
 
 
-
 
NC_014210  Ndas_4479  short-chain dehydrogenase/reductase SDR  35.06 
 
 
260 aa  131  1.0000000000000001e-29  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009955  Dshi_3712  short-chain dehydrogenase/reductase SDR  36.11 
 
 
252 aa  131  1.0000000000000001e-29  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2515  short-chain dehydrogenase/reductase SDR  35.92 
 
 
250 aa  130  1.0000000000000001e-29  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013526  Tter_2271  short-chain dehydrogenase/reductase SDR  34.94 
 
 
257 aa  131  1.0000000000000001e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
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