| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3529 |
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| Symbol | |
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| ID | 4175308 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4236284 |
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| End bp | 4237096 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056558 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_663085 |
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| Protein GI | 109899830 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTTTGCTT ATAATGACAG CCCTATCAAT ATCAATGAGT TAGTTATGTC CAATTACGCT
ACTTACCCAA GCCTGAAAGG CAAAGTTATT CTTATAACCG GCGGTGCTAC TGGTATCGGT
GCGGTTATGG TAGAAGCGTT TATGCGCCAA CAAGCCCGAG TCCTTTTTGT TGATGTGCAA
GAAGAAGCTG CTCATGCATT GTGCAGCAAA TTGCATGCAG AGCTGGGTGC AGCCCCCATT
TTCAAGAACT TAGATACAAC GCATATAGAC GAACTACAGG CCTTTATAAG CTCAATTGGA
CACAGTCACG GGCGGTTAGA CGTGTTAATT AACAATGTCG CCAATGACAC ACGCCACTCA
CCTCTTGATA TCGACCAGCA AGGTTGGCGC GACTGTATGG CTGTAAACCT CGACTCGACG
TTTTTTGCTT GTCAAAGCGC GATCCGCCTA ATGCGCGACA AACGTACCGG CAATATTATT
AATATGAGCT CTATCAATGT GCTGATTGGA CCAAAACAAA TGCCCGGTTA CGTAGCGGCT
AAATCGGCGT TAAACGGTTT GAGTAAATCC TTGGCCAATC AATACGGCGA ATATGGCATA
CGAGTTAATA CTATATTACC CGGCTGGGTG GCCACTGACC GTCAGCTCGC TCTTTGGTTG
ACGCCAGAAG CAGATAAGGA ATGGCAAAAA TCCGTTGCCC TGCGCGGCAG CCTTGAACCC
ATACATGTGG CTAATATGGC GCTATTTTTA GCAGCAGAGG ACAGCGCAAT GATTACTGGC
CAGCAGTTTG TCATTGACGC AGGGCGAACC TGA
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| Protein sequence | MFAYNDSPIN INELVMSNYA TYPSLKGKVI LITGGATGIG AVMVEAFMRQ QARVLFVDVQ
EEAAHALCSK LHAELGAAPI FKNLDTTHID ELQAFISSIG HSHGRLDVLI NNVANDTRHS
PLDIDQQGWR DCMAVNLDST FFACQSAIRL MRDKRTGNII NMSSINVLIG PKQMPGYVAA
KSALNGLSKS LANQYGEYGI RVNTILPGWV ATDRQLALWL TPEADKEWQK SVALRGSLEP
IHVANMALFL AAEDSAMITG QQFVIDAGRT
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