| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1984 |
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| Symbol | |
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| ID | 4252557 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2359793 |
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| End bp | 2360563 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638118597 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_734114 |
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| Protein GI | 113970321 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00682949 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0302653 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTGA CTAATCAATA CCCGAGTTTA CAAGGGAAAA CCATTTTTAT CAGTGGTGGC
GCAACGGGTA TTGGAGCTTG CTTGGTTAAT GCTTTTTTAG AGCAGGGCGC TAAGGTGGCA
TTTGTCGATA TTTTAGTTGA GGAGTCGACT CAACTCGTCG CTGACCTTAA GCAGACTCAA
CCAGAGGCCA GCGTACAATT TTATCACTGC GATCTTGTCG ATATCGCCGC CCTCAAGCGT
GTGATTGCTC AGGTCGAGGA CGATTTAGGT TCAATCTCGG TATTAATTAA CAATGCCGCG
TGCGATCAAC GCCATAGCAT CGACGAAGTG ACCCCAGAAT ATTGGGACCA ATGCCTAAAC
ACCAATTTGC GGCATTATTT TTTCGCCGTA CAAGCGGTCA GGCCGCAAAT GCAGCGCCTC
GGTGGAGGCT CAGTGATCAA CTTAGGTTCA ATGAGTTGGC ACAATCGGCA AGCGGGCATG
GCGGGTTACA CCGCATCTAA GGCCGGCGCC ATGGGCTTAA CCCGAGGGTT AGCTGCCGAT
TTAGGTAAAG ATAAAATCCG GATTAATACC TTAACGCCGG GTTGGGTGAT GACAAAACGT
CAACTCACAC ACTGGGTAGA TAAAGATACG GCAAAACATA TCGAAAATAA CCAATGTATT
AAAGAATATG TAATGCCCGA AGATATTGCT GCTATGGCGT TATTTTTAGC AGCAGATGAT
AGCAAACTCT GCACCGCACA AAATTTTATT GTCGATGGTG GTTGGATTTA A
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| Protein sequence | MKLTNQYPSL QGKTIFISGG ATGIGACLVN AFLEQGAKVA FVDILVEEST QLVADLKQTQ
PEASVQFYHC DLVDIAALKR VIAQVEDDLG SISVLINNAA CDQRHSIDEV TPEYWDQCLN
TNLRHYFFAV QAVRPQMQRL GGGSVINLGS MSWHNRQAGM AGYTASKAGA MGLTRGLAAD
LGKDKIRINT LTPGWVMTKR QLTHWVDKDT AKHIENNQCI KEYVMPEDIA AMALFLAADD
SKLCTAQNFI VDGGWI
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