More than 300 homologs were found in PanDaTox collection
for query gene Smed_0438 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009636  Smed_0438  short-chain dehydrogenase/reductase SDR  100 
 
 
256 aa  520  1e-147  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.285603 
 
 
-
 
NC_008254  Meso_3587  short-chain dehydrogenase/reductase SDR  56.75 
 
 
255 aa  291  6e-78  Chelativorans sp. BNC1  Bacteria  normal  0.435673  n/a   
 
 
-
 
NC_012850  Rleg_0546  short-chain dehydrogenase/reductase SDR  59.06 
 
 
257 aa  287  1e-76  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0503  short-chain dehydrogenase/reductase SDR  58.96 
 
 
253 aa  285  4e-76  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A3706  Short-chain dehydrogenase/reductase SDR  49 
 
 
268 aa  235  7e-61  Burkholderia sp. 383  Bacteria  normal  0.283086  normal  0.654023 
 
 
-
 
NC_007802  Jann_3834  short-chain dehydrogenase/reductase SDR  48 
 
 
256 aa  233  2.0000000000000002e-60  Jannaschia sp. CCS1  Bacteria  normal  0.140905  normal 
 
 
-
 
NC_007493  RSP_1369  Short-chain dehydrogenase/reductase SDR  50.4 
 
 
260 aa  230  2e-59  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_0525  short-chain dehydrogenase/reductase SDR  47.01 
 
 
271 aa  230  2e-59  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0037  short-chain dehydrogenase/reductase SDR  50 
 
 
260 aa  229  4e-59  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3488  short-chain dehydrogenase/reductase SDR  46.53 
 
 
256 aa  228  5e-59  Ruegeria sp. TM1040  Bacteria  normal  normal  0.742718 
 
 
-
 
NC_008836  BMA10229_A1263  short chain dehydrogenase/reductase family oxidoreductase  46.99 
 
 
268 aa  226  2e-58  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2483  short chain dehydrogenase/reductase family oxidoreductase  46.99 
 
 
268 aa  226  2e-58  Burkholderia mallei ATCC 23344  Bacteria  normal  0.709099  n/a   
 
 
-
 
NC_009080  BMA10247_3302  short chain dehydrogenase/reductase family oxidoreductase  46.99 
 
 
268 aa  226  2e-58  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3480  short chain dehydrogenase/reductase family oxidoreductase  46.99 
 
 
268 aa  226  2e-58  Burkholderia pseudomallei 1710b  Bacteria  normal  0.538943  n/a   
 
 
-
 
NC_009074  BURPS668_3445  NAD dependent epimerase/dehydratase family protein  46.99 
 
 
268 aa  226  2e-58  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3483  NAD dependent epimerase/dehydratase family protein  46.99 
 
 
271 aa  226  2e-58  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0403  short chain dehydrogenase/reductase family oxidoreductase  46.99 
 
 
268 aa  226  2e-58  Burkholderia mallei SAVP1  Bacteria  normal  0.253369  n/a   
 
 
-
 
NC_010084  Bmul_2761  short-chain dehydrogenase/reductase SDR  46.99 
 
 
264 aa  226  3e-58  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.386853 
 
 
-
 
NC_010551  BamMC406_0549  short-chain dehydrogenase/reductase SDR  47.41 
 
 
270 aa  224  7e-58  Burkholderia ambifaria MC40-6  Bacteria  decreased coverage  0.00753595  normal  0.67708 
 
 
-
 
NC_007908  Rfer_0433  short-chain dehydrogenase/reductase SDR  42.97 
 
 
254 aa  223  2e-57  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0761  putative oxidoreductase  43.65 
 
 
255 aa  223  2e-57  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.429001 
 
 
-
 
NC_009428  Rsph17025_0027  short-chain dehydrogenase/reductase SDR  50.4 
 
 
288 aa  221  9e-57  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0141  short-chain dehydrogenase/reductase SDR  47.79 
 
 
271 aa  220  1.9999999999999999e-56  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0592  short-chain dehydrogenase/reductase SDR  47.79 
 
 
271 aa  220  1.9999999999999999e-56  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0410788 
 
 
-
 
NC_008542  Bcen2424_0624  short-chain dehydrogenase/reductase SDR  47.79 
 
 
271 aa  220  1.9999999999999999e-56  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0853252  n/a   
 
 
-
 
NC_009952  Dshi_1243  short-chain dehydrogenase/reductase SDR  47.35 
 
 
258 aa  220  1.9999999999999999e-56  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.455666  normal  0.236793 
 
 
-
 
NC_007912  Sde_0771  GntR family transcriptional regulator  43.43 
 
 
256 aa  219  3.9999999999999997e-56  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00515913  normal  0.0552536 
 
 
-
 
NC_009484  Acry_2599  short-chain dehydrogenase/reductase SDR  46.96 
 
 
257 aa  218  5e-56  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_5401  short-chain dehydrogenase/reductase SDR  47.79 
 
 
258 aa  213  1.9999999999999998e-54  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_2612  short-chain dehydrogenase/reductase SDR  43.78 
 
 
266 aa  213  1.9999999999999998e-54  Burkholderia phymatum STM815  Bacteria  normal  normal  0.227086 
 
 
-
 
NC_007651  BTH_I1182  short chain dehydrogenase/reductase family oxidoreductase  45.38 
 
 
271 aa  213  2.9999999999999995e-54  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4106  short-chain dehydrogenase/reductase SDR  41.2 
 
 
256 aa  213  3.9999999999999995e-54  Marinomonas sp. MWYL1  Bacteria  normal  decreased coverage  0.00000000241543 
 
 
-
 
NC_010681  Bphyt_3408  short-chain dehydrogenase/reductase SDR  43.78 
 
 
266 aa  212  4.9999999999999996e-54  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0359384  normal  0.0764099 
 
 
-
 
NC_009654  Mmwyl1_0516  short-chain dehydrogenase/reductase SDR  43.14 
 
 
254 aa  212  4.9999999999999996e-54  Marinomonas sp. MWYL1  Bacteria  normal  0.098133  normal 
 
 
-
 
NC_011663  Sbal223_2145  short-chain dehydrogenase/reductase SDR  40.24 
 
 
256 aa  211  7e-54  Shewanella baltica OS223  Bacteria  normal  0.0597739  normal  0.690345 
 
 
-
 
NC_008321  Shewmr4_1984  short-chain dehydrogenase/reductase SDR  40.24 
 
 
256 aa  211  7.999999999999999e-54  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00682949  normal  0.0302653 
 
 
-
 
NC_009438  Sputcn32_2061  short-chain dehydrogenase/reductase SDR  39.84 
 
 
256 aa  211  1e-53  Shewanella putrefaciens CN-32  Bacteria  normal  0.138185  n/a   
 
 
-
 
NC_007951  Bxe_A0549  putative short-chain dehydrogenase/reductase, FabG-like  44.18 
 
 
266 aa  211  1e-53  Burkholderia xenovorans LB400  Bacteria  normal  0.204322  normal  0.437639 
 
 
-
 
NC_008577  Shewana3_2071  short-chain dehydrogenase/reductase SDR  39.84 
 
 
256 aa  208  9e-53  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00640028  hitchhiker  0.00000248708 
 
 
-
 
NC_008322  Shewmr7_1990  short-chain dehydrogenase/reductase SDR  39.44 
 
 
256 aa  206  3e-52  Shewanella sp. MR-7  Bacteria  normal  0.0224708  unclonable  0.0000202886 
 
 
-
 
NC_010338  Caul_4001  short-chain dehydrogenase/reductase SDR  46.4 
 
 
259 aa  204  1e-51  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C1363  D-xylose dehydrogenase  44.05 
 
 
268 aa  203  3e-51  Burkholderia xenovorans LB400  Bacteria  normal  0.879722  normal  0.999685 
 
 
-
 
NC_008786  Veis_0735  short-chain dehydrogenase/reductase SDR  46.99 
 
 
270 aa  202  4e-51  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.304096  normal 
 
 
-
 
NC_007963  Csal_1729  D-xylose dehydrogenase  46.96 
 
 
245 aa  199  3.9999999999999996e-50  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.380531  n/a   
 
 
-
 
NC_012791  Vapar_1041  short-chain dehydrogenase/reductase SDR  44.58 
 
 
258 aa  198  6e-50  Variovorax paradoxus S110  Bacteria  normal  0.208357  n/a   
 
 
-
 
NC_007802  Jann_2374  short-chain dehydrogenase/reductase SDR  43.14 
 
 
251 aa  198  7.999999999999999e-50  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0941  short-chain dehydrogenase/reductase SDR  46.43 
 
 
251 aa  194  8.000000000000001e-49  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.995863 
 
 
-
 
NC_012791  Vapar_5073  short-chain dehydrogenase/reductase SDR  42.4 
 
 
261 aa  193  2e-48  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_51440  Short-chain dehydrogenase/reductase (SDR) family protein  44.62 
 
 
260 aa  193  3e-48  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4077  short-chain dehydrogenase/reductase SDR  45.24 
 
 
255 aa  192  5e-48  Ralstonia pickettii 12J  Bacteria  normal  0.13973  normal 
 
 
-
 
NC_012857  Rpic12D_4189  short-chain dehydrogenase/reductase SDR  45.24 
 
 
255 aa  192  5e-48  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_0389  short-chain dehydrogenase/reductase SDR  45.78 
 
 
261 aa  189  2.9999999999999997e-47  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.132836  normal  0.554145 
 
 
-
 
NC_008228  Patl_3529  short-chain dehydrogenase/reductase SDR  39.68 
 
 
270 aa  189  2.9999999999999997e-47  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2258  short-chain dehydrogenase/reductase SDR  48.19 
 
 
271 aa  187  1e-46  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0225727  hitchhiker  0.000000282328 
 
 
-
 
BN001304  ANIA_07128  conserved hypothetical protein  38.06 
 
 
275 aa  184  1.0000000000000001e-45  Aspergillus nidulans FGSC A4  Eukaryota  hitchhiker  0.00131023  normal  0.0770254 
 
 
-
 
NC_010506  Swoo_3666  short-chain dehydrogenase/reductase SDR  38.19 
 
 
255 aa  177  1e-43  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00136979  normal 
 
 
-
 
NC_009767  Rcas_0104  short-chain dehydrogenase/reductase SDR  39.92 
 
 
246 aa  172  5.999999999999999e-42  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.650868  normal 
 
 
-
 
NC_009523  RoseRS_4552  short-chain dehydrogenase/reductase SDR  39.11 
 
 
246 aa  164  2.0000000000000002e-39  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5138  short-chain dehydrogenase/reductase SDR  37.4 
 
 
248 aa  156  2e-37  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2059  3-oxoacyl-[acyl-carrier-protein] reductase  38 
 
 
247 aa  155  7e-37  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.0884699 
 
 
-
 
NC_009654  Mmwyl1_4168  short-chain dehydrogenase/reductase SDR  37.35 
 
 
252 aa  153  2.9999999999999998e-36  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_22070  short chain dehydrogenase  39.27 
 
 
252 aa  152  5e-36  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1783  3-ketoacyl-(acyl-carrier-protein) reductase  35.71 
 
 
255 aa  152  5e-36  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000332127  n/a   
 
 
-
 
NC_010511  M446_2746  short-chain dehydrogenase/reductase SDR  40.4 
 
 
249 aa  151  8.999999999999999e-36  Methylobacterium sp. 4-46  Bacteria  normal  0.458004  normal  0.197887 
 
 
-
 
NC_011737  PCC7424_5536  short-chain dehydrogenase/reductase SDR  37.75 
 
 
254 aa  150  1e-35  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0819159 
 
 
-
 
NC_009955  Dshi_3712  short-chain dehydrogenase/reductase SDR  35.32 
 
 
252 aa  149  6e-35  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_0848  2-deoxy-D-gluconate 3-dehydrogenase  34.69 
 
 
253 aa  148  7e-35  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0873  2-deoxy-D-gluconate 3-dehydrogenase  34.69 
 
 
253 aa  148  7e-35  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A2989  2-deoxy-D-gluconate 3-dehydrogenase  34.69 
 
 
253 aa  148  7e-35  Escherichia coli HS  Bacteria  normal  0.0709919  n/a   
 
 
-
 
NC_010498  EcSMS35_2990  2-deoxy-D-gluconate 3-dehydrogenase  33.88 
 
 
253 aa  148  9e-35  Escherichia coli SMS-3-5  Bacteria  normal  0.916776  normal  0.048185 
 
 
-
 
NC_011661  Dtur_1771  short-chain dehydrogenase/reductase SDR  35.34 
 
 
252 aa  148  9e-35  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3164  2-deoxy-D-gluconate 3-dehydrogenase  33.47 
 
 
253 aa  147  2.0000000000000003e-34  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4111  2-deoxy-D-gluconate 3-dehydrogenase  33.47 
 
 
253 aa  147  2.0000000000000003e-34  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  decreased coverage  0.00000566262 
 
 
-
 
NC_011831  Cagg_0630  3-oxoacyl-(acyl-carrier-protein) reductase  37.5 
 
 
246 aa  147  2.0000000000000003e-34  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0259  short-chain dehydrogenase/reductase SDR  39.6 
 
 
249 aa  146  3e-34  Methylobacterium populi BJ001  Bacteria  normal  normal  0.519285 
 
 
-
 
NC_009436  Ent638_3295  2-deoxy-D-gluconate 3-dehydrogenase  35.1 
 
 
253 aa  146  3e-34  Enterobacter sp. 638  Bacteria  normal  normal  0.291132 
 
 
-
 
NC_009616  Tmel_1835  3-oxoacyl-(acyl-carrier-protein) reductase  38.46 
 
 
244 aa  146  3e-34  Thermosipho melanesiensis BI429  Bacteria  normal  0.686329  n/a   
 
 
-
 
NC_009075  BURPS668_A1308  short chain dehydrogenase  36.03 
 
 
256 aa  145  4.0000000000000006e-34  Burkholderia pseudomallei 668  Bacteria  normal  0.480054  n/a   
 
 
-
 
NC_009943  Dole_2662  short-chain dehydrogenase/reductase SDR  38.46 
 
 
266 aa  145  6e-34  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.783199  n/a   
 
 
-
 
NC_008781  Pnap_1241  short-chain dehydrogenase/reductase SDR  37.96 
 
 
260 aa  145  6e-34  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0407787  normal  0.415093 
 
 
-
 
NC_012856  Rpic12D_2162  3-ketoacyl-(acyl-carrier-protein) reductase  33.88 
 
 
252 aa  145  7.0000000000000006e-34  Ralstonia pickettii 12D  Bacteria  normal  0.0100529  normal  0.780963 
 
 
-
 
NC_007336  Reut_C6036  NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR  35.57 
 
 
254 aa  145  7.0000000000000006e-34  Ralstonia eutropha JMP134  Bacteria  normal  0.0528417  n/a   
 
 
-
 
NC_011757  Mchl_2365  short-chain dehydrogenase/reductase SDR  38.8 
 
 
249 aa  145  8.000000000000001e-34  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0450975 
 
 
-
 
NC_010505  Mrad2831_3001  short-chain dehydrogenase/reductase SDR  38 
 
 
249 aa  145  9e-34  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2090  short-chain dehydrogenase/reductase SDR  38.8 
 
 
249 aa  145  9e-34  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.120513 
 
 
-
 
NC_010682  Rpic_2567  3-ketoacyl-(acyl-carrier-protein) reductase  33.88 
 
 
252 aa  144  1e-33  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_006349  BMAA1335  short chain dehydrogenase  35.63 
 
 
256 aa  144  1e-33  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_1966  short-chain dehydrogenase/reductase SDR  37.19 
 
 
254 aa  144  1e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2495  short chain dehydrogenase  35.63 
 
 
256 aa  144  1e-33  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_10784  short chain dehydrogenase  37.76 
 
 
248 aa  144  1e-33  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009078  BURPS1106A_A1235  short chain dehydrogenase  35.63 
 
 
256 aa  144  1e-33  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0973  short chain dehydrogenase  35.63 
 
 
256 aa  144  1e-33  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0594  short chain dehydrogenase  35.63 
 
 
256 aa  144  1e-33  Burkholderia mallei NCTC 10229  Bacteria  normal  0.512344  n/a   
 
 
-
 
NC_008391  Bamb_4102  short chain dehydrogenase  34.41 
 
 
256 aa  144  1e-33  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.188504 
 
 
-
 
NC_010622  Bphy_2616  short chain dehydrogenase  33.47 
 
 
258 aa  144  1e-33  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008784  BMASAVP1_0318  short chain dehydrogenase  35.63 
 
 
256 aa  144  1e-33  Burkholderia mallei SAVP1  Bacteria  normal  0.594764  n/a   
 
 
-
 
NC_011149  SeAg_B3168  2-deoxy-D-gluconate 3-dehydrogenase  34.01 
 
 
253 aa  144  2e-33  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_2812  short-chain dehydrogenase/reductase SDR  36.61 
 
 
255 aa  144  2e-33  Mycobacterium sp. JLS  Bacteria  normal  0.199732  normal 
 
 
-
 
NC_008705  Mkms_2829  short-chain dehydrogenase/reductase SDR  36.61 
 
 
255 aa  143  2e-33  Mycobacterium sp. KMS  Bacteria  normal  0.150517  normal  0.215397 
 
 
-
 
NC_011894  Mnod_4381  short-chain dehydrogenase/reductase SDR  38.8 
 
 
254 aa  143  2e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
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