Gene Bcav_2143 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_2143 
Symbol 
ID7859504 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp2414348 
End bp2415103 
Gene Length756 bp 
Protein Length251 aa 
Translation table11 
GC content71% 
IMG OID643866235 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_002882157 
Protein GI229820631 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00162277 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGAACC CGTTCGACCT GTCAGGCCGC GTGGCCTTTG TCACCGGAGG TGCCCAGGGG 
ATCGGCGAGG CGGTGTCCGT CGGTCTGCGC GACGCCGGGG CGCGCGTGGT GATCGGCGAC
CTCAACGCTG AGATCGGGGA GGCGACGGCG GAGCGGCTCG GCGTCGACTT CGTGCAGCTC
GACGTGACGG ACTCTGCGAG CGTGGACGCC GCCGTCGGGC ACGTCGTCTC GGAGTTCGGG
TCGATCGACG TGGCCGTGAA CAACGCCGGG ATCGTGACGA ACACGCCGGC CGAGGAGATG
GGCGACGACG AGTGGCGGCG GGTGCTCGCC GTCGACCTCG ACGGCGTCTT CTACTGCTGC
CGTGCCGAGG GCCGGGCGAT GCTCGCCGCG GGCCGCGGGA CCATCATCAA CACGGGTTCC
ATGAGCGGAC ACATCTCGAA CCACCCGCAG CCGCAGTCGT CGTACAACGC GGCGAAGGCC
GGCGTCATCC ACCTGACGAA GTCGCTGGCG GGGGAGTGGG CCTCGCGCGG TGTGCGGGTG
AACTCGATCT CGCCGGGGTA CATCGGGACC GAGCTGACTC GCCGGGGGCT CGAGCTGCAG
CCGGAGTGGG GCAAGACGTG GATCGGCGGG ACGCCGCTGG GGCGGGTCGG GGAGCCTGCC
GAGCTGGCGC CGGCGGTGGT GTTCCTGGCG TCCGACGCGT CGAGCTTCTG CACCGGCACC
GACCTGGTGA TCGACGGCGG CTACACCGTC TGGTGA
 
Protein sequence
MTNPFDLSGR VAFVTGGAQG IGEAVSVGLR DAGARVVIGD LNAEIGEATA ERLGVDFVQL 
DVTDSASVDA AVGHVVSEFG SIDVAVNNAG IVTNTPAEEM GDDEWRRVLA VDLDGVFYCC
RAEGRAMLAA GRGTIINTGS MSGHISNHPQ PQSSYNAAKA GVIHLTKSLA GEWASRGVRV
NSISPGYIGT ELTRRGLELQ PEWGKTWIGG TPLGRVGEPA ELAPAVVFLA SDASSFCTGT
DLVIDGGYTV W