More than 300 homologs were found in PanDaTox collection
for query gene Psyr_0789 on replicon NC_007005
Organism: Pseudomonas syringae pv. syringae B728a



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_0916  methyl-accepting chemotaxis protein, putative  88.37 
 
 
404 aa  683    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0789  chemotaxis sensory transducer  100 
 
 
405 aa  812    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_3795  methyl-accepting chemotaxis sensory transducer  38.9 
 
 
383 aa  229  7e-59  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007954  Sden_3293  chemotaxis sensory transducer  41.26 
 
 
387 aa  215  9.999999999999999e-55  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0898  methyl-accepting chemotaxis sensory transducer  41.74 
 
 
379 aa  208  2e-52  Rhodoferax ferrireducens T118  Bacteria  normal  0.827974  n/a   
 
 
-
 
NC_011662  Tmz1t_1314  methyl-accepting chemotaxis sensory transducer  42.07 
 
 
426 aa  171  2e-41  Thauera sp. MZ1T  Bacteria  normal  0.116934  n/a   
 
 
-
 
NC_009439  Pmen_1571  methyl-accepting chemotaxis sensory transducer  38.31 
 
 
362 aa  169  8e-41  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1537  methyl-accepting chemotaxis sensory transducer  32.09 
 
 
377 aa  127  4.0000000000000003e-28  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0414655 
 
 
-
 
NC_008463  PA14_02270  putative chemotaxis transducer  34.43 
 
 
390 aa  108  2e-22  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.319109  normal 
 
 
-
 
NC_009656  PSPA7_0260  putative chemotaxis transducer  33.98 
 
 
391 aa  107  3e-22  Pseudomonas aeruginosa PA7  Bacteria  normal  0.237341  n/a   
 
 
-
 
NC_007298  Daro_0724  chemotaxis sensory transducer  37.42 
 
 
405 aa  98.2  2e-19  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.435605 
 
 
-
 
NC_007520  Tcr_0759  methyl-accepting chemotaxis sensory transducer  31.07 
 
 
406 aa  98.6  2e-19  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3929  methyl-accepting chemotaxis protein  30.22 
 
 
505 aa  96.3  9e-19  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2117  methyl-accepting chemotaxis protein  34.5 
 
 
377 aa  95.9  1e-18  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009439  Pmen_4122  methyl-accepting chemotaxis sensory transducer  44.29 
 
 
676 aa  94.7  3e-18  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_01024  chemotaxis protein  29.97 
 
 
366 aa  91.7  2e-17  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0730182  n/a   
 
 
-
 
NC_010717  PXO_06142  chemotaxis protein  29.97 
 
 
366 aa  91.7  2e-17  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0352354  n/a   
 
 
-
 
NC_009616  Tmel_0144  methyl-accepting chemotaxis sensory transducer  29.91 
 
 
537 aa  91.3  3e-17  Thermosipho melanesiensis BI429  Bacteria  unclonable  0.00000389108  n/a   
 
 
-
 
NC_011071  Smal_1917  methyl-accepting chemotaxis sensory transducer  32.62 
 
 
396 aa  90.9  4e-17  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.386674 
 
 
-
 
NC_008577  Shewana3_2222  methyl-accepting chemotaxis sensory transducer  31.58 
 
 
378 aa  90.5  5e-17  Shewanella sp. ANA-3  Bacteria  normal  0.894674  normal 
 
 
-
 
NC_011663  Sbal223_3725  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  27.84 
 
 
524 aa  89.4  1e-16  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0543  methyl-accepting chemotaxis sensory transducer  27.84 
 
 
524 aa  89.4  1e-16  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2249  methyl-accepting chemotaxis transducer  33.78 
 
 
643 aa  88.2  2e-16  Pseudomonas putida KT2440  Bacteria  normal  0.477129  normal  0.786945 
 
 
-
 
NC_009616  Tmel_1776  methyl-accepting chemotaxis sensory transducer  34.12 
 
 
664 aa  88.6  2e-16  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013124  Afer_1343  methyl-accepting chemotaxis sensory transducer  34.84 
 
 
366 aa  88.6  2e-16  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_1120  methyl-accepting chemotaxis sensory transducer  34.12 
 
 
664 aa  88.6  2e-16  Thermosipho melanesiensis BI429  Bacteria  hitchhiker  0.00177625  n/a   
 
 
-
 
NC_009654  Mmwyl1_3295  methyl-accepting chemotaxis sensory transducer  34.69 
 
 
384 aa  88.6  2e-16  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3489  methyl-accepting chemotaxis sensory transducer  33.78 
 
 
628 aa  88.2  2e-16  Pseudomonas putida F1  Bacteria  normal  0.228387  normal 
 
 
-
 
NC_008700  Sama_2327  putative methyl-accepting chemotaxis sensory transducer  33.5 
 
 
554 aa  89  2e-16  Shewanella amazonensis SB2B  Bacteria  normal  0.644098  normal  0.637343 
 
 
-
 
NC_008322  Shewmr7_1877  methyl-accepting chemotaxis sensory transducer  30 
 
 
378 aa  87.8  3e-16  Shewanella sp. MR-7  Bacteria  normal  0.410986  normal  0.95878 
 
 
-
 
NC_008345  Sfri_1214  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.68 
 
 
527 aa  88.2  3e-16  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_2159  methyl-accepting chemotaxis sensory transducer  27.42 
 
 
414 aa  87.8  3e-16  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1880  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.78 
 
 
628 aa  87.4  4e-16  Pseudomonas putida GB-1  Bacteria  normal  0.454316  normal 
 
 
-
 
NC_010506  Swoo_2617  methyl-accepting chemotaxis sensory transducer  38.89 
 
 
548 aa  87.4  4e-16  Shewanella woodyi ATCC 51908  Bacteria  normal  0.224982  normal  0.210295 
 
 
-
 
NC_009654  Mmwyl1_0457  methyl-accepting chemotaxis sensory transducer  31.5 
 
 
356 aa  87.4  4e-16  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_4649  methyl-accepting chemotaxis sensory transducer  41.48 
 
 
653 aa  87.4  4e-16  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1547  methyl-accepting chemotaxis sensory transducer  41.94 
 
 
407 aa  87.4  4e-16  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_2097  methyl-accepting chemotaxis sensory transducer  30 
 
 
378 aa  87.4  4e-16  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3111  putative methyl-accepting chemotaxis sensory transducer  32.16 
 
 
397 aa  87  5e-16  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_00410  methyl-accepting chemotaxis protein  40.6 
 
 
394 aa  87  5e-16  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1723  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.64 
 
 
626 aa  86.7  6e-16  Pseudomonas putida W619  Bacteria  normal  0.372844  normal 
 
 
-
 
NC_011312  VSAL_I2075  methyl-accepting chemotaxis protein  43.59 
 
 
362 aa  86.7  7e-16  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_0209  methyl-accepting chemotaxis sensory transducer  40.41 
 
 
658 aa  86.7  7e-16  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.603066  n/a   
 
 
-
 
NC_009997  Sbal195_3908  methyl-accepting chemotaxis sensory transducer  27.49 
 
 
524 aa  86.7  7e-16  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3782  methyl-accepting chemotaxis sensory transducer  27.49 
 
 
524 aa  86.3  8e-16  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4223  methyl-accepting chemotaxis sensory transducer  35.08 
 
 
689 aa  85.5  0.000000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.946735  normal  0.191331 
 
 
-
 
NC_003912  CJE1253  methyl-accepting chemotaxis protein  42.06 
 
 
429 aa  85.9  0.000000000000001  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2159  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.87 
 
 
523 aa  86.3  0.000000000000001  Shewanella loihica PV-4  Bacteria  normal  0.416992  normal  0.881373 
 
 
-
 
NC_012793  GWCH70_0714  methyl-accepting chemotaxis sensory transducer  29.15 
 
 
550 aa  85.9  0.000000000000001  Geobacillus sp. WCH70  Bacteria  normal  0.0613025  n/a   
 
 
-
 
NC_009707  JJD26997_0612  methyl-accepting chemotaxis protein  42.06 
 
 
429 aa  85.9  0.000000000000001  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1766  methyl-accepting chemotaxis sensory transducer  29.22 
 
 
536 aa  85.9  0.000000000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013739  Cwoe_3417  methyl-accepting chemotaxis sensory transducer  35.33 
 
 
583 aa  85.9  0.000000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008787  CJJ81176_1128  methyl-accepting chemotaxis protein  42.06 
 
 
429 aa  85.9  0.000000000000001  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3579  chemotaxis sensory transducer  44.63 
 
 
554 aa  84.7  0.000000000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2119  methyl-accepting chemotaxis sensory transducer  33.5 
 
 
548 aa  85.1  0.000000000000002  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3912  methyl-accepting chemotaxis sensory transducer  43.2 
 
 
713 aa  85.5  0.000000000000002  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_1507  methyl-accepting chemotaxis sensory transducer  38.89 
 
 
762 aa  85.1  0.000000000000002  Petrotoga mobilis SJ95  Bacteria  normal  0.463366  n/a   
 
 
-
 
NC_008345  Sfri_2212  methyl-accepting chemotaxis sensory transducer  34.78 
 
 
549 aa  85.1  0.000000000000002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0425  methyl-accepting chemotaxis sensory transducer with Cache sensor  37.14 
 
 
630 aa  84.3  0.000000000000003  Pseudomonas putida W619  Bacteria  normal  0.461628  normal 
 
 
-
 
NC_009052  Sbal_2106  methyl-accepting chemotaxis sensory transducer  35.71 
 
 
380 aa  84.7  0.000000000000003  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1983  methyl-accepting chemotaxis sensory transducer  43.22 
 
 
548 aa  84.3  0.000000000000003  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.000213036  normal  0.437149 
 
 
-
 
NC_009656  PSPA7_2672  putative chemotaxis transducer  41.8 
 
 
538 aa  84  0.000000000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  0.119833  n/a   
 
 
-
 
NC_012039  Cla_1204  MCP-domain signal transduction protein  38.6 
 
 
431 aa  84  0.000000000000004  Campylobacter lari RM2100  Bacteria  normal  0.302368  n/a   
 
 
-
 
NC_007954  Sden_2638  chemotaxis sensory transducer  35.19 
 
 
675 aa  84.3  0.000000000000004  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_1102  methyl-accepting chemotaxis protein  34.81 
 
 
638 aa  84.3  0.000000000000004  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003139  methyl-accepting chemotaxis protein  31.43 
 
 
627 aa  84.3  0.000000000000004  Vibrio sp. Ex25  Bacteria  normal  0.116124  n/a   
 
 
-
 
NC_009457  VC0395_A1741  methyl-accepting chemotaxis protein  38.93 
 
 
623 aa  83.6  0.000000000000005  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2368  methyl-accepting chemotaxis sensory transducer  35.71 
 
 
380 aa  84  0.000000000000005  Shewanella baltica OS195  Bacteria  normal  0.0668336  normal  0.991447 
 
 
-
 
NC_007298  Daro_3125  chemotaxis sensory transducer  36.69 
 
 
407 aa  83.6  0.000000000000005  Dechloromonas aromatica RCB  Bacteria  normal  0.443773  normal 
 
 
-
 
NC_011663  Sbal223_2094  methyl-accepting chemotaxis sensory transducer  34.54 
 
 
380 aa  83.6  0.000000000000005  Shewanella baltica OS223  Bacteria  normal  0.465964  normal 
 
 
-
 
NC_009665  Shew185_2251  methyl-accepting chemotaxis sensory transducer  34.54 
 
 
380 aa  83.6  0.000000000000005  Shewanella baltica OS185  Bacteria  normal  0.0952292  n/a   
 
 
-
 
NC_009486  Tpet_1766  methyl-accepting chemotaxis sensory transducer  39.1 
 
 
605 aa  84  0.000000000000005  Thermotoga petrophila RKU-1  Bacteria  normal  0.053685  n/a   
 
 
-
 
NC_007492  Pfl01_4758  chemotaxis sensory transducer  42.98 
 
 
685 aa  83.6  0.000000000000006  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0781085  normal  0.27831 
 
 
-
 
NC_004347  SO_0987  methyl-accepting chemotaxis protein  28.97 
 
 
554 aa  83.2  0.000000000000007  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_3294  methyl-accepting chemotaxis sensory transducer  26.99 
 
 
524 aa  83.2  0.000000000000007  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1066  methyl-accepting chemotaxis protein  36.84 
 
 
685 aa  83.2  0.000000000000008  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.395137  n/a   
 
 
-
 
NC_013512  Sdel_1434  chemotaxis sensory transducer  32.34 
 
 
530 aa  83.2  0.000000000000008  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03417  methyl-accepting chemotaxis protein  33.51 
 
 
674 aa  83.2  0.000000000000008  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.617562  n/a   
 
 
-
 
NC_013522  Taci_1730  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.99 
 
 
707 aa  83.2  0.000000000000008  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.000446671  n/a   
 
 
-
 
NC_008463  PA14_31400  putative chemotaxis transducer  37.41 
 
 
575 aa  83.2  0.000000000000008  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.307711  hitchhiker  0.0000000000413464 
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  39.31 
 
 
559 aa  82.8  0.000000000000009  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0410  methyl-accepting chemotaxis sensory transducer  32.43 
 
 
548 aa  82.8  0.000000000000009  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0913  histidine kinase, HAMP region: chemotaxis sensory transducer  36.84 
 
 
685 aa  82.8  0.000000000000009  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.724419  normal 
 
 
-
 
NC_008577  Shewana3_0923  methyl-accepting chemotaxis sensory transducer  33.53 
 
 
543 aa  82.8  0.000000000000009  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_2653  methyl-accepting chemotaxis sensory transducer  34.57 
 
 
583 aa  82.4  0.00000000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_03238  chemotaxis sensory transducer  30.58 
 
 
429 aa  82.8  0.00000000000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4692  methyl-accepting chemotaxis protein  45.36 
 
 
533 aa  82.8  0.00000000000001  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2839  methyl-accepting chemotaxis sensory transducer  30.57 
 
 
546 aa  82  0.00000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2554  chemotaxis sensory transducer  35.71 
 
 
663 aa  82.8  0.00000000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.486048 
 
 
-
 
NC_007492  Pfl01_3768  chemotaxis sensory transducer  34.73 
 
 
560 aa  82.4  0.00000000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4186  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  27.9 
 
 
526 aa  82.4  0.00000000000001  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_1836  methyl-accepting chemotaxis sensory transducer  49.46 
 
 
359 aa  82.8  0.00000000000001  Marinomonas sp. MWYL1  Bacteria  normal  0.126283  normal  0.522282 
 
 
-
 
NC_009656  PSPA7_2644  chemotaxis transducer  41.03 
 
 
280 aa  82.8  0.00000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.120039  n/a   
 
 
-
 
NC_008321  Shewmr4_0924  methyl-accepting chemotaxis sensory transducer  33.53 
 
 
543 aa  82.8  0.00000000000001  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2822  putative methyl-accepting chemotaxis sensory transducer  38.93 
 
 
673 aa  82.8  0.00000000000001  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.428629 
 
 
-
 
NC_013739  Cwoe_0996  methyl-accepting chemotaxis sensory transducer with Cache sensor  35.15 
 
 
823 aa  82.8  0.00000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008599  CFF8240_0322  methyl-accepting chemotaxis protein  34.97 
 
 
432 aa  82.4  0.00000000000001  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2257  aerotaxis receptor Aer-1  42.42 
 
 
521 aa  81.6  0.00000000000002  Pseudomonas putida KT2440  Bacteria  normal  0.215452  normal  0.0215353 
 
 
-
 
NC_011312  VSAL_I2193  methyl-accepting chemotaxis protein  53.95 
 
 
697 aa  81.6  0.00000000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2607  putative methyl-accepting chemotaxis sensory transducer  39.68 
 
 
541 aa  81.6  0.00000000000002  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00122932  normal 
 
 
-
 
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