| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3111 |
|---|
| Symbol | |
|---|
| ID | 3965511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 3973850 |
|---|
| End bp | 3975043 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637922208 |
|---|
| Product | putative methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_528580 |
|---|
| Protein GI | 90022753 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCTG CTTGGCCAAT TCAGTTAATA ATAGCGATTT CTGTTAGTGC ATTATCTTTG
GTTTGTAGCA TCGCGCTTTG GACACCTATC GCGTTATTTA CCTGTTTAGC AATAGCCGTA
ATTATTGATA TAGCCTGTTT AGTATCGCTG TGCGCTCACT TTACAAACAA CCGCCAGCAG
GCCGAACATC AAGAAAATTC CCACGCGATT AACCACTTAA ACTCTTTACA AAGAAAGGTG
AGCGACGTAA CCGATACCCC CTGTGAAGAG ATAGTCGCCA TAAGTAATAA AGTGCGTAAC
TTAGCAGAGG AAAGTAGCCT CGCCTTGCAT AAAAGCTTTA CTGTACTTAT GGAAAATACA
CAGCGCGAAC AAGAACTACT GGAATCGATT ACCAAAGACT TAACCCGCAG AGAACACCAA
GAAAAAGCGG ATGGCACGCA AGACGTATCC CTCCACCAAT TTGCAAAAGA AGTGGGCGAT
ATACTTGACG TTTATGTCGG GCTGTTTGTT AACGTGAGTG ACAAAAGCAT ACAAGCAGTG
CACAAAATTC AAGACATGCT TAAAGAACTC GACGATATGT TCAAGCTAAT TAGCGAAATT
CGAGGCCTGG CAGAGCAAAC CAATTTACTC GCTTTGAATG CTGCCATTGA AGCAGCGCGT
GCTGGCGAGG CAGGCAGAGG CTTTGCAGTG GTAGCAGACG AAGTTCGCAA ACTATCGCAA
AGCTCTGGTG CGCTTAACGA TGAGATACGG GTTAAAGCAG AGGCAACTAA ATCTACCGTT
GCCGATGTAG AAAAGGTGGT AGGCGAAATA GCAAGCTTGG ATATGAATAT CGCAATCAAC
GCCAAAGGCC ACCTTGAAGG TATGCTTGCA GAGCTTGAAA GAGTTAACGA TCGGGTTACC
CACACCGCCC GCCAAGGCAG CGAAATAAGC GCGCTTATAA ACAAAGAGGT GATGCGATCT
ATGACGGCAT TGCAGGGCGC CGATAGAATT TCACAGTATT CGGATAACCT TTCAAACAAC
GTATTATCTT TGCGCAATCA TCTACACAAC GCATTCACAC TTAATCAAGC TGTCACCAGT
GTAGAGCAAG GCCTTGCAGA AATAATAAAT AATATAGAAA AAACTTCGCT GCAAACCTCT
ATTGTAATCA GCGATGAAGA TGACCAAGCA GGAGGAGAAA TAGTGCTTTA CTAG
|
|---|
| Protein sequence | MASAWPIQLI IAISVSALSL VCSIALWTPI ALFTCLAIAV IIDIACLVSL CAHFTNNRQQ
AEHQENSHAI NHLNSLQRKV SDVTDTPCEE IVAISNKVRN LAEESSLALH KSFTVLMENT
QREQELLESI TKDLTRREHQ EKADGTQDVS LHQFAKEVGD ILDVYVGLFV NVSDKSIQAV
HKIQDMLKEL DDMFKLISEI RGLAEQTNLL ALNAAIEAAR AGEAGRGFAV VADEVRKLSQ
SSGALNDEIR VKAEATKSTV ADVEKVVGEI ASLDMNIAIN AKGHLEGMLA ELERVNDRVT
HTARQGSEIS ALINKEVMRS MTALQGADRI SQYSDNLSNN VLSLRNHLHN AFTLNQAVTS
VEQGLAEIIN NIEKTSLQTS IVISDEDDQA GGEIVLY
|
|---|
| |