| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2159 |
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| Symbol | |
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| ID | 4923331 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2505029 |
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| End bp | 2506600 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640163744 |
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| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
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| Protein accession | YP_001094284 |
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| Protein GI | 127513087 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.416992 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.881373 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAATA ACCAACCTGT CACTCAGAAA GAGAAGGTGT TTGCCGCCGA CACAATCTTG
TTGTCGACCA CAGACCTTAA GGGCAAGATC AAATACGCTA ATGCTGGTTT TACTCAGGTG
TCTGAGTTTA CCCAGGATGA ACTCTATCGC CAGCCCCACA ATATTGTGCG CCACCCTGAC
ATGCCGCCGG CGGCCTTCGA GTCCATGTGG TCTCGCCTCA AGCAGGGCAA GCCCTGGATT
GGCATAGTGA AGAATCGCGC TAAGTCGGGG GATCACTACT GGGTCAACGC CTATGTGGCT
CCTGTGTTCG AAGGCGGCCA GGTGCACGAA TATCAATCAG TGCGCAGGAA GGCCACCCAG
GCGCAGATAG ATAACGCTCA GGCCCTCTAT GGCGAGCTTA ACGCCGGTAA ACGGCCCCGT
GCGCTAAAGG CGGCGCGCCT CGGTTTTGGC AAGCGTTTGG GCTTGGTCCT GCTGCTGAGC
CTTGGCGTCG GCGTCGCGCT CGCCGGCTAT TCGCCCCTGC TGGCACTGCT GCTGGCAACG
GGCCTGGGAC TTGGTGGGCT CTCTCTGATC TTAAAACCCT TTAATGCCCT GGTGGAACAG
GCGAGCGGCA TCATAGACGA TCCGCTGGCG ACCGCCGTGT ACTGTGGTCG TCAGGATGAG
CTGGGCAAAC TCAGCTTCGC CCTGCAGTAT CTGCTGACTG AAACTGGCGG CGCCGTGGGA
CGCATGGCGG ACTCGGCCGA GTCGATACAG GAACTCAGTG TCAGCCTGAA TGAGACCATC
AGCCATACCC GGGATCGCGC CGACAGTCAG AGCCAGCAGA CCAGTCAAGC GGCCACCGCT
GTGGAGGAGA TGAGCGCCAG CTTTAACGAG GTGAGCCAGA ATATCCAGCA TGCGGCCGAA
GAGATGTCGA TGAGTCATGA GGCGGCCGAG AAGGGCCATG AGCTGCTGGT CGAGGTGATC
CAGGCCATCA AGGGGCTGCA TCAGGAGGTG AGTAACTTCT CCGCCGTGGT GGCCTCTATT
GAGCAGGACA GTCAGGAGAT CAACGAGGTG CTGGAGGTGA TACGGGGTAT CGCCGAGCAG
ACCAACCTGT TGGCGCTCAA TGCCGCCATC GAGGCGGCCC GCGCGGGTGA ATCGGGCCGG
GGCTTCGCCG TGGTGGCCGA TGAGGTGCGC CAGCTCTCCA GCCGCACCAG CGAGTCGACC
AGCCATATCG AGGCGATCGT CAGTAAGTTC AGAGACAGCA CGCTAAAGGC GAGTCAGACC
ATGCAGGCGG GTCAGCGTCA GGCTCAGCAC TCAGTAGGCT TGGCTCAGCA GGTGGATGCC
TCCTTCGAGG AGCTGCGCGC CTCTATCGAT AAGATCAATC AGATGAGCGA TGCCAACGCT
GCTGCCATGA GCCAGCAGAC GGCGGTGGCC AGCGAGATCA GCCAGTCGAT TCAGCTGATC
AACGAGCTAG CCCTGGCCAG CCTGAGTCAG ACCCAGGCCG CGGCAGAGCG GGGCGGTCAG
GTGGAGCGGC TGTCGGCCAA GACTCATCAC CTGTCACAGC AGTTCTGGCG TCAGAGTCTG
CGCATTAAGT GA
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| Protein sequence | MKNNQPVTQK EKVFAADTIL LSTTDLKGKI KYANAGFTQV SEFTQDELYR QPHNIVRHPD
MPPAAFESMW SRLKQGKPWI GIVKNRAKSG DHYWVNAYVA PVFEGGQVHE YQSVRRKATQ
AQIDNAQALY GELNAGKRPR ALKAARLGFG KRLGLVLLLS LGVGVALAGY SPLLALLLAT
GLGLGGLSLI LKPFNALVEQ ASGIIDDPLA TAVYCGRQDE LGKLSFALQY LLTETGGAVG
RMADSAESIQ ELSVSLNETI SHTRDRADSQ SQQTSQAATA VEEMSASFNE VSQNIQHAAE
EMSMSHEAAE KGHELLVEVI QAIKGLHQEV SNFSAVVASI EQDSQEINEV LEVIRGIAEQ
TNLLALNAAI EAARAGESGR GFAVVADEVR QLSSRTSEST SHIEAIVSKF RDSTLKASQT
MQAGQRQAQH SVGLAQQVDA SFEELRASID KINQMSDANA AAMSQQTAVA SEISQSIQLI
NELALASLSQ TQAAAERGGQ VERLSAKTHH LSQQFWRQSL RIK
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