| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3795 |
|---|
| Symbol | |
|---|
| ID | 6160722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4259551 |
|---|
| End bp | 4260702 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641666568 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001792814 |
|---|
| Protein GI | 171060465 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 59 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACAGTG CGGATCGCCC TCGGGCCCTG CTGTTGCCTC CGGTCGGCCT GGCGCTGGCC
GGCGCGGTGA CCACCCTCGT CACGACCGGA TCCAGCTGGG TCGGCATCGT CCTGGCGCTG
GCCCAGGTCG CGGCCGGCAT CGGCATCGGC CTGTGGCAGT CGGCGCGACA CGCGCGGATG
CTGGCGGCGA TCTCGGCCCA CCTCGCCAGC GAGCAGGCCT TCAGCGCCGA GGTGGCACCG
ATCTGGAGCG GCCACATCGA AGCCTCGCGC GAGCAGATGG AAGTGGCGAT CTCGGCCCTG
ACGCGGCGCT TCTCGGGCAT CGTCGCCAAG CTCGCGACCG CGGTCGAGGC CGCCGGCATG
AGCCATGCGA CGGTGCAGGA CAGCGACAAC GGCCTGGGCG CCGTGTTCGC CCGCAGCCAG
CACGAGCTCG GTGTCGTGAT CGAGGCGCAG AAGGCCGCCA CCACCAGCAT GCTCACCATG
CTCGAGAAGG TGCAGGGCCT GCGCCGCTTC GTCACCGACC TGCAGGGCAT GGCCGCCGAT
GTCGCCAAGA TCGCCCAGCA GAGCAACCTG CTGGCGCTCA ACGCCGCCAT CGAGGCGGCC
CGTTTCGGCG AGCAGGGGCG CGGTTTCGCG GTGGTCGCCA AGGAGTTCCG GCTGCTGTCG
ACGATGTCCG GTGAAACCGG CCGCAGCATC GACGAGAAAG TCGGCGTGAT CCACGCCGGA
ATACTCGACG CGTGTGCCGT GGTGCGCGAA CAGGTCGACC AGGAAGAGCA ATCCCTTGTC
ACAACGCAAA CCTCGGTCGG CCGGGTGCTC ACGGAATTCA AGGAAATCAC CGATACCCTT
TTGCAGTCCA GCACGCTGCT CAAGGACGAA AGCACGGGAA TCAAGTCGGA AATCGGCGAT
GCACTGATCC AGCTGCAATT CCAGGATCGG GTGAGCCAGA TCATGAATCA TGTCAAGGAC
AACATCGAGC GCCTGCCCGG GTATTTCCAG GAGCATCAGC AACAGTATGC GCAAAGCGGC
GAACTGCTGC CGATCGATGC CCAGATGCTG CTCACCGAAT TGAAGAACAC CTACGCCATG
AAGGATCAGC ACGTGATCCA CCAGGGCGAA AAAGCGGTGC AGAGCACCGA GACCGAAATC
ACCTTCTTCT AG
|
|---|
| Protein sequence | MNSADRPRAL LLPPVGLALA GAVTTLVTTG SSWVGIVLAL AQVAAGIGIG LWQSARHARM
LAAISAHLAS EQAFSAEVAP IWSGHIEASR EQMEVAISAL TRRFSGIVAK LATAVEAAGM
SHATVQDSDN GLGAVFARSQ HELGVVIEAQ KAATTSMLTM LEKVQGLRRF VTDLQGMAAD
VAKIAQQSNL LALNAAIEAA RFGEQGRGFA VVAKEFRLLS TMSGETGRSI DEKVGVIHAG
ILDACAVVRE QVDQEEQSLV TTQTSVGRVL TEFKEITDTL LQSSTLLKDE STGIKSEIGD
ALIQLQFQDR VSQIMNHVKD NIERLPGYFQ EHQQQYAQSG ELLPIDAQML LTELKNTYAM
KDQHVIHQGE KAVQSTETEI TFF
|
|---|
| |