Gene PSPTO_1066 details

Gene Information

• Locus tag: PSPTO_1066
• ID: 1182701
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 1164246
• End bp: 1166303
• Gene Length: 2058 bp
• Protein Length: 685 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637392444
• Product: methyl-accepting chemotaxis protein
• Protein accession: NP_790900
• Protein GI: 28868281
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.395137
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACAGTC TTTTGTCACC GGGCATGCGC CTGATGGGGC ATTTTGGTTT TGCTCGCAAG 
TTTCAGGTCT TGTTCCTGCT GTTCATGTTG CCGTTGGCGG GCAGTGTGTG GGTAATCACC 
AAGGACTATC GCAACAAGCT CGATGTCATC TCGGGAGAGC AGTCAGGCGT GCGCCAATTG 
CTGGCGCTCG ACGAACTCAA CGTTGAATTG TCCGCTCAGC GCGATCACGC GGCCCGCTGG 
AAAGCCTCCG ATATCCTGCG CGAGCCAACC CCTGCTGCCA AAGAGGCAAT GGCCAATGTC 
GATGCTGGCA TCCCGCGCAT CACCAAAGCG CTCGAGGGCG TCAATGCAGC GTTGATCCGT 
GAAAGCGCAC CTGCCGACAC AATGAATCGT TTCAAGACGC TGCAGGCGGC AGTCACCGGT 
CTGGACACCG CATCGCTGCG TACCGTTGGC TGGTGGCCGG ATGGCTACGA GCGCTTCACG 
ACGGTGTTGA ATCTGGTCCA GGCACTGCGC GAACAGATCG CCATGGACAG CGGGCTGATT 
CTCGACCCCT GGCTTGAAAC CTACATGCTC ATGCAGCTTT CCACCCAGCA AGTGCCAGAC 
CTGATCGAGC GTATCGGTCG CTTGTCCAGT GTCGGGCAGA CGTCAGTGGC GTCGGGCCAG 
TTCAGCCTGC AGAGCCGTCT GCAAATGCGC GATCTGCGTG GCCGTATCGA CGACTCCAAA 
GAGCAAATGA ACAAGGCGGC AAGCCTGCTG CTCTCCAAGC TTCCCGAACA GTTGCAACCG 
TGGGCGGACA AATACGCTGC CGCAAAACAA GTGCTGGAAA CCGAGCTGAA GGTGATTGAT 
GACGGCGTTT TCGGCGGGAG CATCAAGCTC AAGCCCGAAG AGTTTGAAAA GAGTATCGAT 
ACCTTGACCG GCAGTACGTC GGACCTGCGC AAGCAGTCGC TTGACGCGCT TAACGGGCGC 
CTCGATTACT ACCATGAAAC CTCCAACATG GAGTTCATCC CGCTGGCGGT GATCTTCGGC 
ATTCTGGTGG CCATGGCGAT CTATCTGTTC GCGTGCCTGC AATCGTCCAT TCGCAACAGC 
GCCAGTGGCA TTACCACCCT TGCCGAGTCG CTGCGTGACG GCAACCTGTG TGTCGAAGTG 
GCGGTGCAGG GGCGCGACGA GCTTGCCGCC ATCAGCAGGG CGCTGAACGT TGCAGTTGTG 
CAACTGCGCA CCAGCCTGCT GGGCGTCAAT CAGGAGACGG TGCGGGTCGG CGATGCCGTG 
TTGACCCTCA ATGCTCAATC AAGCGGGACG CTGACCGAGG TCGAAGACCA GCAGCACCAG 
ATCAGTCAGA TTGCAGCGGC GGCGACCGAG TTGGCGGCGA CATCTCAGGG CGTGGCCAGA 
AGCTGTGAGC AGGCATCGGA GAGCGCGCGG CATACCCGTC GAATCGCCGA GCAAAGCAGC 
CATGACAGCC TGCGCACCAC TGACAGTATC CAGCAGCTCA ACCAGCGCCT GACCGAAACG 
GCCGCGGCTC TCGGTAGGGT GAGTGAGCAG GGGCAACAGA TTCAATCGGT GGTGGACGCC 
ATTCGCGGCA TCGCCGAACA AACCAACCTG CTGGCGCTCA ATGCGGCCAT CGAAGCGGCG 
CGGGCAGGTG AGCAAGGCCG TGGGTTCGCG GTGGTTGCTG ACGAAGTACG CAGCCTGTCA 
CAACGAACAC AGGCCTCCAC CGCACAGATT GCCGGCACCG TAGACAGCCT GCGTTCCACC 
GTGACCCAGG CGGTCACCCT GATGGAAGCC GCCTGCGGCC AGGCCGTCAA CGACGCGCAA 
TCGGTGACCG GGCTGGGTAT CCGTCTCGGC GAAATCGCCA CAGCGGTGCA GGGCGTGACC 
GATACGCTGG CGCAGATCTC CACCGCCGTC GAAGAGCAGG CCTCGACCGC CGATGAAGTC 
AGCAGCAATA TCCAGCAGGT CGATCAGGCT GCCGGGCGCT TGCTGGAAGG CGCGCGGGCG 
GTCAATCAGG CAGCGGACAC ATTGAGTCAG GGCAGCCGGG CGCTGAATGA CAATACGGCG 
CGGTTCAGGT TGGGCTGA 

 

Protein sequence

MNSLLSPGMR LMGHFGFARK FQVLFLLFML PLAGSVWVIT KDYRNKLDVI SGEQSGVRQL 
LALDELNVEL SAQRDHAARW KASDILREPT PAAKEAMANV DAGIPRITKA LEGVNAALIR 
ESAPADTMNR FKTLQAAVTG LDTASLRTVG WWPDGYERFT TVLNLVQALR EQIAMDSGLI 
LDPWLETYML MQLSTQQVPD LIERIGRLSS VGQTSVASGQ FSLQSRLQMR DLRGRIDDSK 
EQMNKAASLL LSKLPEQLQP WADKYAAAKQ VLETELKVID DGVFGGSIKL KPEEFEKSID 
TLTGSTSDLR KQSLDALNGR LDYYHETSNM EFIPLAVIFG ILVAMAIYLF ACLQSSIRNS 
ASGITTLAES LRDGNLCVEV AVQGRDELAA ISRALNVAVV QLRTSLLGVN QETVRVGDAV 
LTLNAQSSGT LTEVEDQQHQ ISQIAAAATE LAATSQGVAR SCEQASESAR HTRRIAEQSS 
HDSLRTTDSI QQLNQRLTET AAALGRVSEQ GQQIQSVVDA IRGIAEQTNL LALNAAIEAA 
RAGEQGRGFA VVADEVRSLS QRTQASTAQI AGTVDSLRST VTQAVTLMEA ACGQAVNDAQ 
SVTGLGIRLG EIATAVQGVT DTLAQISTAV EEQASTADEV SSNIQQVDQA AGRLLEGARA 
VNQAADTLSQ GSRALNDNTA RFRLG