More than 300 homologs were found in PanDaTox collection
for query gene PSPTO_5554 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_5554  methyl-accepting chemotaxis protein  100 
 
 
676 aa  1352    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_5093  histidine kinase, HAMP region: chemotaxis sensory transducer  88.76 
 
 
676 aa  1190    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0580  putative methyl-accepting chemotaxis sensory transducer  33.43 
 
 
679 aa  283  6.000000000000001e-75  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  43.91 
 
 
638 aa  236  7e-61  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  42.21 
 
 
543 aa  236  1.0000000000000001e-60  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  45.18 
 
 
572 aa  234  3e-60  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1752  methyl-accepting chemotaxis sensory transducer  41.19 
 
 
492 aa  232  1e-59  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.000000224536 
 
 
-
 
NC_009483  Gura_0960  methyl-accepting chemotaxis sensory transducer  29.35 
 
 
666 aa  228  3e-58  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.0000181378  n/a   
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  42.49 
 
 
716 aa  227  5.0000000000000005e-58  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  40.16 
 
 
713 aa  227  5.0000000000000005e-58  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_007492  Pfl01_4022  chemotaxis sensory transducer  40.79 
 
 
493 aa  227  6e-58  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4192  chemotaxis sensory transducer  39.95 
 
 
654 aa  227  6e-58  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  42.26 
 
 
712 aa  226  8e-58  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  42.57 
 
 
541 aa  225  2e-57  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2310  methyl-accepting chemotaxis sensory transducer  40.86 
 
 
492 aa  223  9e-57  Pseudomonas putida KT2440  Bacteria  normal  0.178377  decreased coverage  0.00000773933 
 
 
-
 
NC_009512  Pput_3459  methyl-accepting chemotaxis sensory transducer  40.86 
 
 
492 aa  223  9e-57  Pseudomonas putida F1  Bacteria  normal  hitchhiker  0.000433284 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  41.76 
 
 
712 aa  223  9e-57  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_008740  Maqu_3269  methyl-accepting chemotaxis sensory transducer  40.85 
 
 
605 aa  222  9.999999999999999e-57  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.000515244  n/a   
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  40 
 
 
773 aa  222  1.9999999999999999e-56  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  40.44 
 
 
541 aa  222  1.9999999999999999e-56  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_010506  Swoo_0732  methyl-accepting chemotaxis sensory transducer  40.74 
 
 
555 aa  221  3e-56  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.177926 
 
 
-
 
NC_010322  PputGB1_1912  methyl-accepting chemotaxis sensory transducer  40.29 
 
 
492 aa  221  3.9999999999999997e-56  Pseudomonas putida GB-1  Bacteria  normal  0.407863  hitchhiker  0.000000143908 
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  36.05 
 
 
640 aa  221  3.9999999999999997e-56  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_007005  Psyr_2059  histidine kinase, HAMP region: chemotaxis sensory transducer  41.43 
 
 
491 aa  221  5e-56  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.116428  normal  0.539616 
 
 
-
 
NC_009901  Spea_4196  methyl-accepting chemotaxis sensory transducer  42.57 
 
 
552 aa  220  6e-56  Shewanella pealeana ATCC 700345  Bacteria  normal  0.14959  n/a   
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  38.92 
 
 
552 aa  220  7.999999999999999e-56  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  39.5 
 
 
642 aa  219  1e-55  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_007912  Sde_0081  putative methyl-accepting chemotaxis sensory transducer  41.36 
 
 
544 aa  219  1e-55  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1998  methyl-accepting chemotaxis sensory transducer  43.16 
 
 
714 aa  219  2e-55  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0164438 
 
 
-
 
NC_008345  Sfri_0080  methyl-accepting chemotaxis sensory transducer  42.63 
 
 
636 aa  219  2e-55  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0882  methyl-accepting chemotaxis sensory transducer  40.62 
 
 
630 aa  217  5.9999999999999996e-55  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3480  methyl-accepting chemotaxis sensory transducer  40.62 
 
 
630 aa  217  5.9999999999999996e-55  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3405  methyl-accepting chemotaxis sensory transducer with Cache sensor  40.62 
 
 
630 aa  217  7e-55  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3603  methyl-accepting chemotaxis sensory transducer  40.62 
 
 
630 aa  216  8e-55  Shewanella baltica OS195  Bacteria  normal  0.840663  normal 
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  37.6 
 
 
637 aa  216  9e-55  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  38.36 
 
 
568 aa  216  9.999999999999999e-55  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_2562  methyl-accepting chemotaxis sensory transducer  34.32 
 
 
671 aa  216  9.999999999999999e-55  Thioalkalivibrio sp. K90mix  Bacteria  normal  hitchhiker  0.0046581 
 
 
-
 
NC_004578  PSPTO_2254  methyl-accepting chemotaxis protein  40.97 
 
 
491 aa  215  1.9999999999999998e-54  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.177753  n/a   
 
 
-
 
NC_007005  Psyr_1798  histidine kinase, HAMP region: chemotaxis sensory transducer  40.83 
 
 
681 aa  215  1.9999999999999998e-54  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.668901  normal  0.381267 
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  41.76 
 
 
634 aa  215  1.9999999999999998e-54  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  39.5 
 
 
642 aa  214  2.9999999999999995e-54  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_011138  MADE_01731  Methyl-accepting chemotaxis protein  39.89 
 
 
539 aa  214  3.9999999999999995e-54  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3114  histidine kinase, HAMP region: chemotaxis sensory transducer  39.41 
 
 
541 aa  214  3.9999999999999995e-54  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.860602  normal 
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  44.55 
 
 
637 aa  214  3.9999999999999995e-54  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_007520  Tcr_1999  methyl-accepting chemotaxis sensory transducer  38.15 
 
 
405 aa  214  3.9999999999999995e-54  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0895  methyl-accepting chemotaxis sensory transducer  41.26 
 
 
630 aa  214  3.9999999999999995e-54  Shewanella sp. ANA-3  Bacteria  normal  normal  0.174985 
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  41.71 
 
 
634 aa  214  4.9999999999999996e-54  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_1056  methyl-accepting chemotaxis protein  40.51 
 
 
630 aa  214  4.9999999999999996e-54  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007954  Sden_0099  chemotaxis sensory transducer  38.67 
 
 
639 aa  214  4.9999999999999996e-54  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000152719  n/a   
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  35.97 
 
 
640 aa  212  2e-53  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  40.34 
 
 
653 aa  212  2e-53  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_008321  Shewmr4_3042  methyl-accepting chemotaxis sensory transducer  40.97 
 
 
630 aa  212  2e-53  Shewanella sp. MR-4  Bacteria  normal  normal  0.397129 
 
 
-
 
NC_008322  Shewmr7_0930  methyl-accepting chemotaxis sensory transducer  40.97 
 
 
630 aa  212  2e-53  Shewanella sp. MR-7  Bacteria  normal  normal  0.257402 
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  38.32 
 
 
541 aa  211  3e-53  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  38.9 
 
 
629 aa  211  3e-53  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  45.58 
 
 
523 aa  211  4e-53  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  41.56 
 
 
548 aa  210  7e-53  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_004578  PSPTO_2511  methyl-accepting chemotaxis protein  40.62 
 
 
653 aa  210  8e-53  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.295069  n/a   
 
 
-
 
NC_004578  PSPTO_3680  methyl-accepting chemotaxis protein  39.94 
 
 
676 aa  210  9e-53  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  40.36 
 
 
638 aa  209  1e-52  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0167  methyl-accepting chemotaxis sensory transducer  38.75 
 
 
540 aa  209  2e-52  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0466  methyl-accepting chemotaxis protein  33.27 
 
 
541 aa  208  2e-52  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2526  methyl-accepting chemotaxis protein  37.63 
 
 
559 aa  208  2e-52  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.591236  n/a   
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  39.14 
 
 
564 aa  209  2e-52  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2880  putative methyl-accepting chemotaxis sensory transducer  36.51 
 
 
558 aa  209  2e-52  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  40.66 
 
 
638 aa  209  2e-52  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  38.35 
 
 
541 aa  209  2e-52  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  42.81 
 
 
636 aa  208  2e-52  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  37.43 
 
 
674 aa  208  3e-52  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_009831  Ssed_3256  methyl-accepting chemotaxis protein  36.24 
 
 
558 aa  208  3e-52  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  40.06 
 
 
638 aa  207  4e-52  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  43.59 
 
 
634 aa  207  5e-52  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008463  PA14_26280  putative chemotaxis transducer  40.71 
 
 
545 aa  207  5e-52  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.917899 
 
 
-
 
NC_009654  Mmwyl1_3948  methyl-accepting chemotaxis sensory transducer  36.69 
 
 
658 aa  207  5e-52  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  38.61 
 
 
638 aa  207  7e-52  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  41.67 
 
 
638 aa  206  8e-52  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  34.93 
 
 
633 aa  206  1e-51  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_004578  PSPTO_3279  methyl-accepting chemotaxis protein  38.21 
 
 
541 aa  206  1e-51  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.149652  n/a   
 
 
-
 
NC_009439  Pmen_1701  methyl-accepting chemotaxis sensory transducer  39.77 
 
 
650 aa  206  1e-51  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.076135 
 
 
-
 
NC_013456  VEA_003896  methyl-accepting chemotaxis protein  40.68 
 
 
545 aa  204  3e-51  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000288698  n/a   
 
 
-
 
NC_010501  PputW619_3984  methyl-accepting chemotaxis sensory transducer  41.55 
 
 
688 aa  205  3e-51  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2444  methyl-accepting chemotaxis sensory transducer  41.48 
 
 
489 aa  204  4e-51  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00221824  normal 
 
 
-
 
NC_008700  Sama_1713  putative methyl-accepting chemotaxis sensory transducer  39.77 
 
 
666 aa  204  4e-51  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000425798  normal  0.0665929 
 
 
-
 
NC_009997  Sbal195_3549  methyl-accepting chemotaxis sensory transducer  37.5 
 
 
548 aa  204  5e-51  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0908  methyl-accepting chemotaxis protein  42.46 
 
 
633 aa  204  5e-51  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000172893  n/a   
 
 
-
 
NC_011663  Sbal223_3352  methyl-accepting chemotaxis sensory transducer  37.57 
 
 
573 aa  204  5e-51  Shewanella baltica OS223  Bacteria  normal  0.729863  normal 
 
 
-
 
NC_013457  VEA_001073  N-acetylglucosamine regulated methyl-accepting chemotaxis protein  37.91 
 
 
628 aa  204  5e-51  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1249  methyl-accepting chemotaxis protein  37.91 
 
 
596 aa  204  5e-51  Vibrio cholerae O395  Bacteria  hitchhiker  0.000483868  n/a   
 
 
-
 
NC_009831  Ssed_1007  methyl-accepting chemotaxis sensory transducer  35.69 
 
 
573 aa  204  5e-51  Shewanella sediminis HAW-EB3  Bacteria  normal  0.02936  normal 
 
 
-
 
NC_009438  Sputcn32_3017  methyl-accepting chemotaxis sensory transducer  42.81 
 
 
630 aa  204  6e-51  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4658  chemotaxis sensory transducer, Pas/Pac sensor  42.36 
 
 
529 aa  203  7e-51  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_1124  methyl-accepting chemotaxis sensory transducer  39.31 
 
 
547 aa  203  8e-51  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.00163985  n/a   
 
 
-
 
NC_009052  Sbal_0938  methyl-accepting chemotaxis sensory transducer  37.57 
 
 
548 aa  203  8e-51  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_1007  hemolysin secretion protein HylB  31.55 
 
 
548 aa  203  9e-51  Vibrio cholerae O395  Bacteria  normal  0.702356  n/a   
 
 
-
 
NC_009654  Mmwyl1_2773  methyl-accepting chemotaxis sensory transducer  39.37 
 
 
540 aa  203  9e-51  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3424  methyl-accepting chemotaxis sensory transducer  37.57 
 
 
548 aa  203  9.999999999999999e-51  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  38.98 
 
 
620 aa  202  1.9999999999999998e-50  Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_003910  CPS_3864  methyl-accepting chemotaxis protein  35.47 
 
 
568 aa  202  1.9999999999999998e-50  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_43220  putative methyl-accepting chemotaxis transducer  38.41 
 
 
652 aa  202  1.9999999999999998e-50  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.625872 
 
 
-
 
NC_007492  Pfl01_0447  chemotaxis sensory transducer  37.57 
 
 
541 aa  202  1.9999999999999998e-50  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
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