Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5554 |
Symbol | |
ID | 1187246 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 6327228 |
End bp | 6329258 |
Gene Length | 2031 bp |
Protein Length | 676 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637396873 |
Product | methyl-accepting chemotaxis protein |
Protein accession | NP_795278 |
Protein GI | 28872659 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAACATCC TTTCGCCTGG TATCTACCTG ACCAACCGCC TGCGCTTCCC TGCCAAGTTC GCCGTATTAG CCATCATCGT CGTCATTCCG CTCATCGTTC TGGGGTTGCG GGTGTTCAAC AGCCTGAACT CGAGCATCGA CACCGTCGCC CAAGAGCGCG TCGGTCGAGA GTACCTGCAC GTCGTAACGC CCATCCTGCG GCTGTCCATG CTGCAGCGTG CGGCAACCAA CCGTTTGCTC GCTGGCGATG CGTCCGCGGC TCAAGACCTG GTCACCAACC GTGGCCAACT CGAGACAGCT TTCAATAACC TTGCCGACAT GGACGCCCGT CAGGGCCGCA CGCTGGAAAC CGAGAATCGC GTGCAGCGCC TGCGTGACGG TGCCCGCTCG TTGATGGATA GCGTCAAGCC GGGCCTTGCG CAAGACGAGT TTTTTGCACA GTGGAGCGAG CAACTGGCTC AGACACTCAA CTTTATCTAC TACGTTTCGG CCACCTCGGG CATGGTGCTG GACGAAGATT ACGCCTCGCT GTTTATGATC GACCTGAGCA CCATCAGGAT GCCTCGGGAA ATCAACGTGG CCGGTCAGAT CCGTGGCATT ACGGCGGGAT TGAGCACCGG GCAGGGCCTG AACGTACCGA TGCGCGGTTC GCTTGAAAGC CTGTTGAAGA TCGAGCTGCA ATTTCGCGCG GAGCTTGAGC AAAGCATTCG CCTGCTCAAG CGTCGCGCTC CAGAACTCGC TGCCCGTATT GGCGAGCCGA TAGCCACTGC CACCTCAACG ATGGACAGCT TTCGCAACGA TCTCTCGACC TACGTCAGAG GTTCTGAGTT TTCAGTGCAG CAGGGTCAGG CGCTGAGTGC TCGCGGCAAT GTCGTGGTCG CGGGCCTCTA CAAGGCTCAG GACGAAATTC AGACCGCGCT TCAGGGCGAA CTGGATGCGC GTTACGACGC GCTCCTGCGT CAACGCGAAG TTGTCATCGC CATGTGCGTG GTGATGGGCC TATTGTTGCT CTATGCGTTC TGCAGCATTT ATCGCGCCTT GCGCGTTGCC ATCGACAGCC TGCTGGGTGT TACCCGGCGT CTGGCAGACG GCGATCTGAG TGCCCGTGCG CAGGTGGTCA GCCAAGACGA AATCGCGGAT ATCGGCAACG GCCTGAACGC GATGGCAGAG GCGTTCGCCA GCTCCATTTC GCACATGGAT CGCACCTCCT ACGAGCTGTC CGACGTCGCT GCACGACTGG GCACCTCCAT CGGTCTGGCC AAGCAGTCGA TGAACGCCCA GCAGGCTGAA ACCGAACAAG TGGCCACGGC CATCAACGAG ATGACCGCGA GCGTCGCCGA CGTGGCGCAG AATACCGAAG GCGCAGCGAT GGCGGCTGAT GCGGCAAACA CTGCGTCGCG TGACGGTTTG CGCATCATGG GCCAGACCCA CTCGACCATT CAGGCGTTGG CTGAAGAGGT GGAAATCAGC GCCCAGAAAG TCCAGGCCCT GGCCCTGCAT AGTCAGTCGA TTGGTGGCGT TATCCAGGTC ATCAGCACGA TTGCCGACCA GACCAACCTG TTGGCCCTGA ACGCTGCCAT CGAAGCCGCA CGGGCCGGCG AGCAAGGGCG CGGGTTTGCG GTGGTGGCTG ACGAAGTCCG CACCCTGGCA TCGCGCACCC AGGCTTCCAC CCAAGAGATC CGCAGCATCA TCGAGCAACT GCAAAGTGCA ACCCATGCCG CCGTGCAACA GATGCAGGCC GGGCAGCACA AGGCGCAGGC CTGTATCAGT GCGGCCAGCG AAGCATCGGG CAGCCTGTCG AGCATCAGTC AGGGTGTGGA GCGTATCGTC GAGATGAACA CCCAGATCGC CAGCGCTGCT GTGCAGCAGC ATGCGGTGTC CGAAGACATC AACCGCAACG TCATGGAGAT TCGCAACAGC TCCGGGACCC TGATGCTGGG CATCGACAAC AATGCGGTCA CGGCCGAAGA GCTGGCGCGG GTTGCCAGTG ACATGCGCAG TGTCGTGGCG CGCTTCAAAC TGGTTGCCTG A
|
Protein sequence | MNILSPGIYL TNRLRFPAKF AVLAIIVVIP LIVLGLRVFN SLNSSIDTVA QERVGREYLH VVTPILRLSM LQRAATNRLL AGDASAAQDL VTNRGQLETA FNNLADMDAR QGRTLETENR VQRLRDGARS LMDSVKPGLA QDEFFAQWSE QLAQTLNFIY YVSATSGMVL DEDYASLFMI DLSTIRMPRE INVAGQIRGI TAGLSTGQGL NVPMRGSLES LLKIELQFRA ELEQSIRLLK RRAPELAARI GEPIATATST MDSFRNDLST YVRGSEFSVQ QGQALSARGN VVVAGLYKAQ DEIQTALQGE LDARYDALLR QREVVIAMCV VMGLLLLYAF CSIYRALRVA IDSLLGVTRR LADGDLSARA QVVSQDEIAD IGNGLNAMAE AFASSISHMD RTSYELSDVA ARLGTSIGLA KQSMNAQQAE TEQVATAINE MTASVADVAQ NTEGAAMAAD AANTASRDGL RIMGQTHSTI QALAEEVEIS AQKVQALALH SQSIGGVIQV ISTIADQTNL LALNAAIEAA RAGEQGRGFA VVADEVRTLA SRTQASTQEI RSIIEQLQSA THAAVQQMQA GQHKAQACIS AASEASGSLS SISQGVERIV EMNTQIASAA VQQHAVSEDI NRNVMEIRNS SGTLMLGIDN NAVTAEELAR VASDMRSVVA RFKLVA
|
| |