More than 300 homologs were found in PanDaTox collection
for query gene Fjoh_1441 on replicon NC_009441
Organism: Flavobacterium johnsoniae UW101



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009441  Fjoh_1441  LytTR family two component transcriptional regulator  100 
 
 
248 aa  488  1e-137  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5058  two component transcriptional regulator, LytTR family  37.66 
 
 
247 aa  167  1e-40  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.0000256301  normal  0.0140106 
 
 
-
 
NC_013730  Slin_3427  two component transcriptional regulator, LytTR family  29.02 
 
 
256 aa  111  1.0000000000000001e-23  Spirosoma linguale DSM 74  Bacteria  normal  0.239231  normal 
 
 
-
 
NC_013730  Slin_3896  two component transcriptional regulator, LytTR family  26.48 
 
 
245 aa  103  4e-21  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.356034 
 
 
-
 
NC_013037  Dfer_4820  two component transcriptional regulator, LytTR family  29.22 
 
 
244 aa  96.3  4e-19  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.334432  normal 
 
 
-
 
NC_014230  CA2559_08681  transcriptional regulator  26.14 
 
 
240 aa  92  8e-18  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.803849  n/a   
 
 
-
 
NC_013132  Cpin_6068  response regulator receiver protein  30.04 
 
 
248 aa  86.7  3e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_0841  response regulator receiver  35.16 
 
 
135 aa  85.5  7e-16  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_009712  Mboo_1813  response regulator receiver protein  37.1 
 
 
316 aa  82.4  0.000000000000006  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.445517  normal  0.445863 
 
 
-
 
NC_007796  Mhun_2645  putative PAS/PAC sensor protein  31.46 
 
 
336 aa  81.6  0.00000000000001  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_008751  Dvul_0434  putative PAS/PAC sensor protein  35.83 
 
 
458 aa  81.6  0.00000000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4307  sigma54 specific transcriptional regulator, Fis family  33.33 
 
 
635 aa  79.3  0.00000000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.056389 
 
 
-
 
NC_009712  Mboo_1311  putative PAS/PAC sensor protein  32.86 
 
 
340 aa  79  0.00000000000006  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.187179 
 
 
-
 
NC_013037  Dfer_5460  sigma54 specific transcriptional regulator, Fis family  33.6 
 
 
650 aa  79  0.00000000000006  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.665291  normal  0.225769 
 
 
-
 
NC_009712  Mboo_1808  putative PAS/PAC sensor protein  32.85 
 
 
603 aa  79  0.00000000000007  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.268482 
 
 
-
 
NC_009712  Mboo_2032  response regulator receiver protein  36.89 
 
 
387 aa  79  0.00000000000007  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.0686114 
 
 
-
 
NC_011729  PCC7424_4564  response regulator receiver sensor signal transduction histidine kinase  32.82 
 
 
376 aa  78.6  0.00000000000008  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.531352 
 
 
-
 
NC_013730  Slin_1287  two component transcriptional regulator, LytTR family  27.54 
 
 
242 aa  78.6  0.00000000000009  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.692184 
 
 
-
 
NC_013132  Cpin_4084  two component transcriptional regulator, LytTR family  27.2 
 
 
244 aa  78.6  0.0000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.445273  normal  0.0209217 
 
 
-
 
NC_009972  Haur_0985  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  32.26 
 
 
704 aa  76.6  0.0000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  decreased coverage  0.000494124  n/a   
 
 
-
 
NC_007948  Bpro_3511  response regulator receiver sensor signal transduction histidine kinase  33.6 
 
 
384 aa  75.1  0.0000000000009  Polaromonas sp. JS666  Bacteria  normal  normal  0.253652 
 
 
-
 
NC_013132  Cpin_1348  two component, sigma54 specific, transcriptional regulator, Fis family  32.76 
 
 
461 aa  75.5  0.0000000000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2920  LytTR family two component transcriptional regulator  26.64 
 
 
245 aa  75.1  0.000000000001  Enterobacter sp. 638  Bacteria  normal  normal  0.106094 
 
 
-
 
NC_009483  Gura_2117  putative PAS/PAC sensor protein  33.85 
 
 
257 aa  74.3  0.000000000002  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2938  LytTR family two component transcriptional regulator  27.64 
 
 
240 aa  73.9  0.000000000002  Clostridium phytofermentans ISDg  Bacteria  normal  0.0274197  n/a   
 
 
-
 
NC_009712  Mboo_1807  putative PAS/PAC sensor protein  32.67 
 
 
258 aa  73.2  0.000000000003  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.254511 
 
 
-
 
NC_007413  Ava_0066  response regulator receiver sensor signal transduction histidine kinase  31.06 
 
 
377 aa  73.2  0.000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.359193  normal  0.0132857 
 
 
-
 
NC_011832  Mpal_0048  putative PAS/PAC sensor protein  32.14 
 
 
255 aa  73.6  0.000000000003  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_013132  Cpin_2085  putative two component, sigma54 specific, transcriptional regulator, Fis family  30.37 
 
 
457 aa  73.2  0.000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_1631  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  31.21 
 
 
561 aa  72.8  0.000000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.608678  n/a   
 
 
-
 
NC_007796  Mhun_3039  response regulator receiver sensor signal transduction histidine kinase  35.83 
 
 
355 aa  72.8  0.000000000005  Methanospirillum hungatei JF-1  Archaea  normal  0.610599  normal 
 
 
-
 
NC_009712  Mboo_1528  response regulator receiver protein  34.96 
 
 
450 aa  72.8  0.000000000005  Candidatus Methanoregula boonei 6A8  Archaea  hitchhiker  0.00374994  normal  0.77554 
 
 
-
 
NC_013132  Cpin_0577  two component transcriptional regulator, LytTR family  28.45 
 
 
231 aa  72.8  0.000000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0893  response regulator receiver sensor signal transduction histidine kinase  29.49 
 
 
359 aa  72.4  0.000000000006  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1242  multi-sensor signal transduction histidine kinase  29.66 
 
 
472 aa  72.8  0.000000000006  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.41521  normal 
 
 
-
 
NC_013132  Cpin_4365  two component, sigma54 specific, transcriptional regulator, Fis family  26.24 
 
 
471 aa  72.4  0.000000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.231326 
 
 
-
 
NC_007796  Mhun_2576  response regulator receiver domain-containing protein  34.96 
 
 
122 aa  72  0.000000000007  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007796  Mhun_1724  response regulator receiver domain-containing protein  32.87 
 
 
352 aa  72  0.000000000008  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_009712  Mboo_2336  response regulator receiver protein  35.48 
 
 
355 aa  72  0.000000000008  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.404573  normal  0.642469 
 
 
-
 
NC_007498  Pcar_2709  two component signal transduction response regulator  30.83 
 
 
429 aa  71.6  0.000000000009  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_1630  two component transcriptional regulator, LytTR family  22.8 
 
 
243 aa  72  0.000000000009  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.192215 
 
 
-
 
NC_013132  Cpin_0115  two component, sigma54 specific, transcriptional regulator, Fis family  30.71 
 
 
481 aa  71.2  0.00000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_2285  response regulator receiver  31.3 
 
 
130 aa  71.6  0.00000000001  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000158247  n/a   
 
 
-
 
NC_013132  Cpin_2060  two component transcriptional regulator, LytTR family  27.87 
 
 
240 aa  71.2  0.00000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1912  response regulator receiver protein  36.13 
 
 
263 aa  70.9  0.00000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.181503  normal  0.732361 
 
 
-
 
NC_010571  Oter_2329  LytTR family two component transcriptional regulator  23.41 
 
 
255 aa  70.9  0.00000000002  Opitutus terrae PB90-1  Bacteria  normal  0.0531557  decreased coverage  0.00207881 
 
 
-
 
NC_014248  Aazo_1725  multi-sensor signal transduction histidine kinase  31.45 
 
 
499 aa  70.5  0.00000000002  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1007  putative GAF sensor protein  32.79 
 
 
311 aa  70.5  0.00000000003  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.164021  normal  0.860345 
 
 
-
 
NC_008609  Ppro_3008  multi-sensor hybrid histidine kinase  31.3 
 
 
953 aa  70.1  0.00000000003  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_4327  transcriptional regulator, NifA subfamily, Fis Family  28.57 
 
 
875 aa  69.7  0.00000000004  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.184763 
 
 
-
 
NC_007650  BTH_II1400  response regulator  25.5 
 
 
243 aa  69.7  0.00000000005  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3178  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  26.12 
 
 
426 aa  68.9  0.00000000006  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1497  putative PAS/PAC sensor protein  32.23 
 
 
380 aa  68.9  0.00000000006  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.506851  normal  0.137069 
 
 
-
 
NC_011729  PCC7424_1114  response regulator receiver sensor signal transduction histidine kinase  30.28 
 
 
373 aa  68.6  0.00000000008  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007908  Rfer_0895  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  31.67 
 
 
701 aa  68.9  0.00000000008  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02291  predicted response regulator in two-component system withYpdA  25.23 
 
 
244 aa  68.2  0.0000000001  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1276  two component transcriptional regulator, LytTR family  25.23 
 
 
244 aa  68.2  0.0000000001  Escherichia coli DH1  Bacteria  normal  0.435037  n/a   
 
 
-
 
NC_007413  Ava_3003  PAS/PAC sensor hybrid histidine kinase  31.45 
 
 
498 aa  68.2  0.0000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_2637  putative PAS/PAC sensor protein  34.17 
 
 
461 aa  68.2  0.0000000001  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007955  Mbur_0883  response regulator receiver  29.19 
 
 
273 aa  68.2  0.0000000001  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2533  response regulator  25.23 
 
 
244 aa  68.2  0.0000000001  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_3613  response regulator  25.23 
 
 
244 aa  68.2  0.0000000001  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.560415 
 
 
-
 
NC_013061  Phep_4189  LytTr DNA-binding region  28.69 
 
 
231 aa  68.2  0.0000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.537023 
 
 
-
 
NC_009801  EcE24377A_2671  response regulator  25.23 
 
 
244 aa  68.2  0.0000000001  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1288  LytTR family two component transcriptional regulator  25.23 
 
 
244 aa  68.2  0.0000000001  Escherichia coli ATCC 8739  Bacteria  normal  0.524379  normal 
 
 
-
 
NC_009800  EcHS_A2518  response regulator  25.23 
 
 
244 aa  68.2  0.0000000001  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E2750  response regulator  25.23 
 
 
244 aa  68.2  0.0000000001  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_2328  LytTR family two component transcriptional regulator  22.32 
 
 
255 aa  67.4  0.0000000002  Opitutus terrae PB90-1  Bacteria  normal  0.261765  decreased coverage  0.00199939 
 
 
-
 
NC_011769  DvMF_2677  response regulator receiver sensor hybrid histidine kinase  37.7 
 
 
636 aa  67  0.0000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.068934 
 
 
-
 
NC_013173  Dbac_0866  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  25.13 
 
 
701 aa  67.4  0.0000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.711392  n/a   
 
 
-
 
NC_008554  Sfum_2639  multi-sensor hybrid histidine kinase  24.56 
 
 
817 aa  67.8  0.0000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_0488  response regulator receiver protein  24.26 
 
 
252 aa  67.4  0.0000000002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4010  two component transcriptional regulator, LytTR family  25.85 
 
 
231 aa  67.4  0.0000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0569074  decreased coverage  0.00157623 
 
 
-
 
NC_013132  Cpin_1844  two component transcriptional regulator, LytTR family  28.84 
 
 
236 aa  66.6  0.0000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3671  Sigma 54 interacting domain protein  28.33 
 
 
657 aa  67  0.0000000003  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_0913  response regulator receiver protein  29.75 
 
 
124 aa  66.6  0.0000000003  Candidatus Methanoregula boonei 6A8  Archaea  normal  hitchhiker  0.0000000115879 
 
 
-
 
NC_007575  Suden_0616  two component transcriptional regulator  31.82 
 
 
249 aa  65.9  0.0000000006  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_0190  LytR/AlgR family transcriptional regulator  22.64 
 
 
244 aa  65.9  0.0000000006  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.625509  n/a   
 
 
-
 
NC_009511  Swit_4495  LytTR family two component transcriptional regulator  23.43 
 
 
245 aa  65.9  0.0000000007  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.17015 
 
 
-
 
NC_011832  Mpal_0573  response regulator receiver protein  34.19 
 
 
261 aa  65.9  0.0000000007  Methanosphaerula palustris E1-9c  Archaea  normal  0.666159  normal  0.332219 
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  35.77 
 
 
204 aa  65.5  0.0000000007  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  34.62 
 
 
197 aa  65.5  0.0000000008  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_013733  Slin_6983  two component transcriptional regulator, LytTR family  26.16 
 
 
230 aa  65.5  0.0000000008  Spirosoma linguale DSM 74  Bacteria  normal  0.659349  normal 
 
 
-
 
NC_009712  Mboo_1488  response regulator receiver protein  32.77 
 
 
450 aa  65.5  0.0000000008  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.379239 
 
 
-
 
NC_013132  Cpin_4853  two component, sigma54 specific, transcriptional regulator, Fis family  29.32 
 
 
457 aa  65.5  0.0000000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.231814  hitchhiker  0.00735887 
 
 
-
 
NC_007796  Mhun_0118  putative PAS/PAC sensor protein  33.05 
 
 
265 aa  65.5  0.0000000009  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  33.59 
 
 
194 aa  64.7  0.000000001  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  34.96 
 
 
200 aa  65.1  0.000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_2955  response regulator  34.62 
 
 
199 aa  64.7  0.000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5358  two component transcriptional regulator, LytTR family  27 
 
 
235 aa  64.7  0.000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5458  putative two component, sigma54 specific, transcriptional regulator, Fis family  28.45 
 
 
582 aa  65.1  0.000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.336827 
 
 
-
 
NC_011884  Cyan7425_2337  signal transduction histidine kinase  26.52 
 
 
352 aa  63.9  0.000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A2603  response regulator  25.2 
 
 
243 aa  64.3  0.000000002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_2407  response regulator receiver protein  32.59 
 
 
182 aa  64.3  0.000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_013037  Dfer_0764  two component transcriptional regulator, LytTR family  24.9 
 
 
245 aa  64.3  0.000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.626213 
 
 
-
 
NC_013510  Tcur_2860  response regulator receiver and ANTAR domain protein  34.06 
 
 
214 aa  64.3  0.000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  0.153721  n/a   
 
 
-
 
NC_007355  Mbar_A3448  putative transcriptional regulator  33.33 
 
 
143 aa  63.9  0.000000003  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.132297  normal  0.0606491 
 
 
-
 
NC_007948  Bpro_3510  PAS/PAC sensor hybrid histidine kinase  32.23 
 
 
521 aa  63.5  0.000000003  Polaromonas sp. JS666  Bacteria  normal  normal  0.269968 
 
 
-
 
NC_007955  Mbur_0834  response regulator receiver  32.87 
 
 
134 aa  63.2  0.000000003  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000017528  n/a   
 
 
-
 
NC_008009  Acid345_0420  LytR/AlgR family transcriptional regulator  25.3 
 
 
317 aa  63.5  0.000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0328897  normal  0.0302219 
 
 
-
 
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