More than 300 homologs were found in PanDaTox collection
for query gene Mboo_0913 on replicon NC_009712
Organism: Candidatus Methanoregula boonei 6A8



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009712  Mboo_0913  response regulator receiver protein  100 
 
 
124 aa  254  4e-67  Candidatus Methanoregula boonei 6A8  Archaea  normal  hitchhiker  0.0000000115879 
 
 
-
 
NC_011832  Mpal_2212  response regulator receiver protein  42.24 
 
 
122 aa  108  2.0000000000000002e-23  Methanosphaerula palustris E1-9c  Archaea  normal  0.092497  normal  0.290386 
 
 
-
 
NC_011726  PCC8801_0428  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  40 
 
 
455 aa  100  5e-21  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0439  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  39.17 
 
 
455 aa  100  6e-21  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.444664 
 
 
-
 
NC_007948  Bpro_3510  PAS/PAC sensor hybrid histidine kinase  43.1 
 
 
521 aa  97.8  4e-20  Polaromonas sp. JS666  Bacteria  normal  normal  0.269968 
 
 
-
 
NC_009712  Mboo_0900  response regulator receiver protein  37.39 
 
 
126 aa  95.9  2e-19  Candidatus Methanoregula boonei 6A8  Archaea  normal  hitchhiker  0.000110071 
 
 
-
 
NC_007498  Pcar_2709  two component signal transduction response regulator  37.29 
 
 
429 aa  93.2  1e-18  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_2576  response regulator receiver domain-containing protein  37.07 
 
 
122 aa  92.8  1e-18  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_009483  Gura_1730  multi-sensor signal transduction histidine kinase  35 
 
 
591 aa  92  2e-18  Geobacter uraniireducens Rf4  Bacteria  normal  0.319599  n/a   
 
 
-
 
NC_007948  Bpro_3511  response regulator receiver sensor signal transduction histidine kinase  36.67 
 
 
384 aa  92  2e-18  Polaromonas sp. JS666  Bacteria  normal  normal  0.253652 
 
 
-
 
NC_007955  Mbur_0841  response regulator receiver  38.14 
 
 
135 aa  92.4  2e-18  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_007796  Mhun_2637  putative PAS/PAC sensor protein  34.75 
 
 
461 aa  91.3  4e-18  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_013173  Dbac_0866  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  38.33 
 
 
701 aa  90.1  8e-18  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.711392  n/a   
 
 
-
 
NC_007413  Ava_3003  PAS/PAC sensor hybrid histidine kinase  33.33 
 
 
498 aa  89  2e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011832  Mpal_0048  putative PAS/PAC sensor protein  38.14 
 
 
255 aa  88.2  3e-17  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_007575  Suden_0616  two component transcriptional regulator  35.9 
 
 
249 aa  87.4  7e-17  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_1724  response regulator receiver domain-containing protein  34.75 
 
 
352 aa  87.4  7e-17  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_011729  PCC7424_1114  response regulator receiver sensor signal transduction histidine kinase  36.44 
 
 
373 aa  87  8e-17  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_4326  PAS/PAC sensor hybrid histidine kinase  36.13 
 
 
571 aa  86.7  9e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5460  sigma54 specific transcriptional regulator, Fis family  40 
 
 
650 aa  86.3  1e-16  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.665291  normal  0.225769 
 
 
-
 
NC_007908  Rfer_0895  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  37.29 
 
 
701 aa  85.1  3e-16  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1497  putative PAS/PAC sensor protein  34.71 
 
 
380 aa  84.7  4e-16  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.506851  normal  0.137069 
 
 
-
 
NC_011729  PCC7424_4564  response regulator receiver sensor signal transduction histidine kinase  34.75 
 
 
376 aa  84.7  4e-16  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.531352 
 
 
-
 
NC_009483  Gura_2117  putative PAS/PAC sensor protein  36.44 
 
 
257 aa  84.7  4e-16  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_1725  multi-sensor signal transduction histidine kinase  34.75 
 
 
499 aa  84.3  5e-16  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0268  sigma54 specific transcriptional regulator, Fis family  38.26 
 
 
651 aa  84  6e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_2285  response regulator receiver  33.9 
 
 
130 aa  84  6e-16  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000158247  n/a   
 
 
-
 
NC_011769  DvMF_1460  putative PAS/PAC sensor protein  38.98 
 
 
474 aa  84  7e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.81808 
 
 
-
 
NC_013132  Cpin_4307  sigma54 specific transcriptional regulator, Fis family  42.11 
 
 
635 aa  83.6  8e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.056389 
 
 
-
 
NC_013037  Dfer_5458  putative two component, sigma54 specific, transcriptional regulator, Fis family  39.13 
 
 
582 aa  83.6  9e-16  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.336827 
 
 
-
 
NC_008751  Dvul_0434  putative PAS/PAC sensor protein  35.59 
 
 
458 aa  83.2  0.000000000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2337  signal transduction histidine kinase  33.9 
 
 
352 aa  82.4  0.000000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_4302  signal transduction histidine kinase  32.5 
 
 
343 aa  82  0.000000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.219335  normal  0.321802 
 
 
-
 
NC_009712  Mboo_1912  response regulator receiver protein  33.88 
 
 
263 aa  82.4  0.000000000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.181503  normal  0.732361 
 
 
-
 
NC_008609  Ppro_3008  multi-sensor hybrid histidine kinase  33.9 
 
 
953 aa  82.4  0.000000000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1528  response regulator receiver protein  31.9 
 
 
450 aa  81.6  0.000000000000003  Candidatus Methanoregula boonei 6A8  Archaea  hitchhiker  0.00374994  normal  0.77554 
 
 
-
 
NC_007355  Mbar_A3448  putative transcriptional regulator  36.44 
 
 
143 aa  81.3  0.000000000000004  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.132297  normal  0.0606491 
 
 
-
 
NC_007519  Dde_3002  putative PAS/PAC sensor protein  36.67 
 
 
469 aa  81.3  0.000000000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.345319  n/a   
 
 
-
 
NC_009712  Mboo_1311  putative PAS/PAC sensor protein  33.88 
 
 
340 aa  81.3  0.000000000000004  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.187179 
 
 
-
 
NC_011884  Cyan7425_3178  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  32.2 
 
 
426 aa  81.3  0.000000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_3039  response regulator receiver sensor signal transduction histidine kinase  31.09 
 
 
355 aa  81.3  0.000000000000005  Methanospirillum hungatei JF-1  Archaea  normal  0.610599  normal 
 
 
-
 
NC_007413  Ava_0066  response regulator receiver sensor signal transduction histidine kinase  35 
 
 
377 aa  80.5  0.000000000000007  Anabaena variabilis ATCC 29413  Bacteria  normal  0.359193  normal  0.0132857 
 
 
-
 
NC_009712  Mboo_1242  multi-sensor signal transduction histidine kinase  32.77 
 
 
472 aa  80.1  0.000000000000009  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.41521  normal 
 
 
-
 
NC_013730  Slin_3896  two component transcriptional regulator, LytTR family  32.52 
 
 
245 aa  79.3  0.00000000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.356034 
 
 
-
 
NC_007796  Mhun_0455  response regulator receiver domain-containing protein  33.9 
 
 
238 aa  79.3  0.00000000000002  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.21261 
 
 
-
 
NC_007908  Rfer_0893  response regulator receiver sensor signal transduction histidine kinase  34.17 
 
 
359 aa  79  0.00000000000002  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1813  response regulator receiver protein  31.36 
 
 
316 aa  78.6  0.00000000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.445517  normal  0.445863 
 
 
-
 
NC_008554  Sfum_2639  multi-sensor hybrid histidine kinase  37.29 
 
 
817 aa  79  0.00000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1488  response regulator receiver protein  32.48 
 
 
450 aa  78.6  0.00000000000003  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.379239 
 
 
-
 
NC_009972  Haur_0985  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  33.9 
 
 
704 aa  78.2  0.00000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  decreased coverage  0.000494124  n/a   
 
 
-
 
NC_013730  Slin_3671  Sigma 54 interacting domain protein  37.07 
 
 
657 aa  78.2  0.00000000000004  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1807  putative PAS/PAC sensor protein  31.36 
 
 
258 aa  78.2  0.00000000000004  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.254511 
 
 
-
 
NC_013132  Cpin_0115  two component, sigma54 specific, transcriptional regulator, Fis family  38.26 
 
 
481 aa  77.8  0.00000000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_2686  putative PAS/PAC sensor protein  33.33 
 
 
337 aa  77.8  0.00000000000005  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.209027 
 
 
-
 
NC_013132  Cpin_1348  two component, sigma54 specific, transcriptional regulator, Fis family  36.52 
 
 
461 aa  77.4  0.00000000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1808  putative PAS/PAC sensor protein  32.2 
 
 
603 aa  77  0.00000000000007  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.268482 
 
 
-
 
NC_007796  Mhun_1200  response regulator receiver domain-containing protein  31.93 
 
 
248 aa  77  0.00000000000007  Methanospirillum hungatei JF-1  Archaea  normal  0.0783054  normal  0.0763711 
 
 
-
 
NC_010551  BamMC406_1235  multi-sensor hybrid histidine kinase  34.43 
 
 
989 aa  76.3  0.0000000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  0.172784  normal 
 
 
-
 
NC_010623  Bphy_4529  multi-sensor hybrid histidine kinase  34.43 
 
 
989 aa  75.5  0.0000000000002  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1360  putative PAS/PAC sensor protein  31.09 
 
 
429 aa  75.9  0.0000000000002  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00110028  hitchhiker  0.000665614 
 
 
-
 
NC_008751  Dvul_2282  histidine kinase  35.54 
 
 
667 aa  75.9  0.0000000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2085  putative two component, sigma54 specific, transcriptional regulator, Fis family  35.65 
 
 
457 aa  75.1  0.0000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1007  putative GAF sensor protein  30.65 
 
 
311 aa  74.3  0.0000000000004  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.164021  normal  0.860345 
 
 
-
 
NC_011832  Mpal_0573  response regulator receiver protein  33.62 
 
 
261 aa  74.3  0.0000000000005  Methanosphaerula palustris E1-9c  Archaea  normal  0.666159  normal  0.332219 
 
 
-
 
NC_011832  Mpal_1773  response regulator receiver sensor signal transduction histidine kinase  28.81 
 
 
386 aa  73.9  0.0000000000006  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_013132  Cpin_4853  two component, sigma54 specific, transcriptional regulator, Fis family  37.61 
 
 
457 aa  73.9  0.0000000000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.231814  hitchhiker  0.00735887 
 
 
-
 
NC_013037  Dfer_4820  two component transcriptional regulator, LytTR family  30.51 
 
 
244 aa  73.2  0.000000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.334432  normal 
 
 
-
 
NC_009712  Mboo_2032  response regulator receiver protein  33.33 
 
 
387 aa  73.2  0.000000000001  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.0686114 
 
 
-
 
NC_011769  DvMF_2677  response regulator receiver sensor hybrid histidine kinase  35.25 
 
 
636 aa  72  0.000000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.068934 
 
 
-
 
NC_013132  Cpin_4365  two component, sigma54 specific, transcriptional regulator, Fis family  32.76 
 
 
471 aa  72.8  0.000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.231326 
 
 
-
 
NC_007519  Dde_1631  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  35.04 
 
 
561 aa  71.6  0.000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.608678  n/a   
 
 
-
 
NC_007955  Mbur_1557  response regulator receiver  30.77 
 
 
131 aa  72  0.000000000003  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000000412225  n/a   
 
 
-
 
NC_013037  Dfer_1630  two component transcriptional regulator, LytTR family  36.97 
 
 
243 aa  70.9  0.000000000005  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.192215 
 
 
-
 
NC_007796  Mhun_0118  putative PAS/PAC sensor protein  30.33 
 
 
265 aa  70.9  0.000000000006  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007796  Mhun_2645  putative PAS/PAC sensor protein  31.67 
 
 
336 aa  69.3  0.00000000002  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_013730  Slin_4327  transcriptional regulator, NifA subfamily, Fis Family  36.13 
 
 
875 aa  68.9  0.00000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.184763 
 
 
-
 
NC_014230  CA2559_08681  transcriptional regulator  30.17 
 
 
240 aa  68.6  0.00000000003  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.803849  n/a   
 
 
-
 
NC_007413  Ava_3669  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  32.2 
 
 
432 aa  67.8  0.00000000004  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_2294  response regulator receiver  31.48 
 
 
134 aa  68.2  0.00000000004  Methanococcoides burtonii DSM 6242  Archaea  normal  0.371138  n/a   
 
 
-
 
NC_009712  Mboo_2407  response regulator receiver protein  29.66 
 
 
182 aa  67.8  0.00000000005  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_014230  CA2559_05930  DNA-binding response regulator, LuxR family protein  31.03 
 
 
207 aa  67.4  0.00000000006  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1609  response regulator receiver protein  32.46 
 
 
463 aa  67.4  0.00000000007  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.672475  normal  0.374216 
 
 
-
 
NC_013730  Slin_3427  two component transcriptional regulator, LytTR family  33.33 
 
 
256 aa  67.4  0.00000000007  Spirosoma linguale DSM 74  Bacteria  normal  0.239231  normal 
 
 
-
 
NC_008751  Dvul_2052  putative PAS/PAC sensor protein  28.33 
 
 
414 aa  66.2  0.0000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  0.948346  normal 
 
 
-
 
NC_007355  Mbar_A2510  transcriptional regulator  31.36 
 
 
157 aa  66.2  0.0000000001  Methanosarcina barkeri str. Fusaro  Archaea  decreased coverage  0.000843612  normal  0.354799 
 
 
-
 
NC_008825  Mpe_A2860  response regulator  34.75 
 
 
198 aa  66.2  0.0000000001  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2207  sigma54 specific transcriptional regulator, Fis family  35.9 
 
 
653 aa  66.6  0.0000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.000576072 
 
 
-
 
NC_013132  Cpin_6068  response regulator receiver protein  28.81 
 
 
248 aa  66.2  0.0000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_1441  LytTR family two component transcriptional regulator  29.75 
 
 
248 aa  66.6  0.0000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1012  response regulator receiver domain-containing protein  35.85 
 
 
109 aa  65.5  0.0000000002  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_2822  two-component response regulator  35.9 
 
 
267 aa  65.5  0.0000000002  Paracoccus denitrificans PD1222  Bacteria  normal  0.230061  normal 
 
 
-
 
NC_010338  Caul_4330  response regulator receiver protein  28.7 
 
 
127 aa  65.1  0.0000000003  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1358  putative PAS/PAC sensor protein  29.66 
 
 
404 aa  64.3  0.0000000006  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.873442  normal  0.0258422 
 
 
-
 
NC_007955  Mbur_0834  response regulator receiver  28.57 
 
 
134 aa  63.9  0.0000000007  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000017528  n/a   
 
 
-
 
NC_007955  Mbur_0883  response regulator receiver  37.84 
 
 
273 aa  63.2  0.000000001  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_007575  Suden_1951  response regulator receiver domain-containing protein  28.07 
 
 
135 aa  62  0.000000002  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.103033  n/a   
 
 
-
 
NC_013441  Gbro_2893  response regulator receiver  32.77 
 
 
206 aa  60.8  0.000000005  Gordonia bronchialis DSM 43247  Bacteria  normal  0.723289  n/a   
 
 
-
 
NC_007490  RSP_4195  response regulator receiver protein  29.75 
 
 
154 aa  60.8  0.000000005  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.81513  n/a   
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  28.81 
 
 
205 aa  60.5  0.000000007  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_1618  response regulator receiver/ANTAR domain-containing protein  29.17 
 
 
199 aa  60.5  0.000000007  Frankia sp. CcI3  Bacteria  normal  0.144201  normal  0.292856 
 
 
-
 
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