More than 300 homologs were found in PanDaTox collection
for query gene Slin_3427 on replicon NC_013730
Organism: Spirosoma linguale DSM 74



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013730  Slin_3427  two component transcriptional regulator, LytTR family  100 
 
 
256 aa  523  1e-147  Spirosoma linguale DSM 74  Bacteria  normal  0.239231  normal 
 
 
-
 
NC_013730  Slin_3896  two component transcriptional regulator, LytTR family  36 
 
 
245 aa  157  1e-37  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.356034 
 
 
-
 
NC_014230  CA2559_08681  transcriptional regulator  32.38 
 
 
240 aa  144  1e-33  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.803849  n/a   
 
 
-
 
NC_013132  Cpin_6068  response regulator receiver protein  30 
 
 
248 aa  125  7e-28  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_4820  two component transcriptional regulator, LytTR family  29.27 
 
 
244 aa  118  9e-26  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.334432  normal 
 
 
-
 
NC_009441  Fjoh_1441  LytTR family two component transcriptional regulator  29.02 
 
 
248 aa  111  1.0000000000000001e-23  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5058  two component transcriptional regulator, LytTR family  30.83 
 
 
247 aa  110  2.0000000000000002e-23  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.0000256301  normal  0.0140106 
 
 
-
 
NC_013037  Dfer_1630  two component transcriptional regulator, LytTR family  30.56 
 
 
243 aa  108  6e-23  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.192215 
 
 
-
 
NC_007355  Mbar_A3448  putative transcriptional regulator  44.17 
 
 
143 aa  108  1e-22  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.132297  normal  0.0606491 
 
 
-
 
NC_009712  Mboo_0900  response regulator receiver protein  47.11 
 
 
126 aa  107  2e-22  Candidatus Methanoregula boonei 6A8  Archaea  normal  hitchhiker  0.000110071 
 
 
-
 
NC_007955  Mbur_2285  response regulator receiver  41.13 
 
 
130 aa  105  8e-22  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000158247  n/a   
 
 
-
 
NC_007955  Mbur_0841  response regulator receiver  46.55 
 
 
135 aa  101  1e-20  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_009972  Haur_0985  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  41.46 
 
 
704 aa  100  2e-20  Herpetosiphon aurantiacus ATCC 23779  Bacteria  decreased coverage  0.000494124  n/a   
 
 
-
 
NC_007796  Mhun_1724  response regulator receiver domain-containing protein  41.88 
 
 
352 aa  99.4  5e-20  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007955  Mbur_1557  response regulator receiver  43.33 
 
 
131 aa  99.4  5e-20  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000000412225  n/a   
 
 
-
 
NC_009483  Gura_1730  multi-sensor signal transduction histidine kinase  40.65 
 
 
591 aa  98.6  9e-20  Geobacter uraniireducens Rf4  Bacteria  normal  0.319599  n/a   
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  39.34 
 
 
197 aa  97.8  1e-19  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_007948  Bpro_3511  response regulator receiver sensor signal transduction histidine kinase  37.33 
 
 
384 aa  97.8  2e-19  Polaromonas sp. JS666  Bacteria  normal  normal  0.253652 
 
 
-
 
NC_007796  Mhun_2637  putative PAS/PAC sensor protein  39.84 
 
 
461 aa  96.7  3e-19  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_009712  Mboo_2407  response regulator receiver protein  34.71 
 
 
182 aa  96.3  4e-19  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_009483  Gura_2117  putative PAS/PAC sensor protein  39.84 
 
 
257 aa  96.3  4e-19  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2709  two component signal transduction response regulator  41.94 
 
 
429 aa  95.9  6e-19  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_4529  multi-sensor hybrid histidine kinase  38.71 
 
 
989 aa  95.5  8e-19  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1813  response regulator receiver protein  42.24 
 
 
316 aa  95.1  9e-19  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.445517  normal  0.445863 
 
 
-
 
NC_014248  Aazo_1725  multi-sensor signal transduction histidine kinase  41.18 
 
 
499 aa  95.1  9e-19  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1497  putative PAS/PAC sensor protein  39.67 
 
 
380 aa  95.1  1e-18  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.506851  normal  0.137069 
 
 
-
 
NC_011832  Mpal_0048  putative PAS/PAC sensor protein  42.74 
 
 
255 aa  95.1  1e-18  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_007796  Mhun_0455  response regulator receiver domain-containing protein  38.81 
 
 
238 aa  94.4  2e-18  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.21261 
 
 
-
 
NC_011832  Mpal_2212  response regulator receiver protein  41.88 
 
 
122 aa  94  2e-18  Methanosphaerula palustris E1-9c  Archaea  normal  0.092497  normal  0.290386 
 
 
-
 
NC_008609  Ppro_3008  multi-sensor hybrid histidine kinase  39.68 
 
 
953 aa  93.2  3e-18  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2337  signal transduction histidine kinase  43.22 
 
 
352 aa  93.2  4e-18  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0066  response regulator receiver sensor signal transduction histidine kinase  42.74 
 
 
377 aa  92.4  5e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  0.359193  normal  0.0132857 
 
 
-
 
NC_009712  Mboo_1488  response regulator receiver protein  39.32 
 
 
450 aa  92.4  6e-18  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.379239 
 
 
-
 
NC_009712  Mboo_1807  putative PAS/PAC sensor protein  41.13 
 
 
258 aa  92  9e-18  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.254511 
 
 
-
 
NC_009712  Mboo_2032  response regulator receiver protein  37.1 
 
 
387 aa  91.3  1e-17  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.0686114 
 
 
-
 
NC_010551  BamMC406_1235  multi-sensor hybrid histidine kinase  37.9 
 
 
989 aa  91.7  1e-17  Burkholderia ambifaria MC40-6  Bacteria  normal  0.172784  normal 
 
 
-
 
NC_009712  Mboo_1528  response regulator receiver protein  34.04 
 
 
450 aa  91.3  1e-17  Candidatus Methanoregula boonei 6A8  Archaea  hitchhiker  0.00374994  normal  0.77554 
 
 
-
 
NC_011884  Cyan7425_3178  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  39.66 
 
 
426 aa  90.9  2e-17  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4326  PAS/PAC sensor hybrid histidine kinase  33.97 
 
 
571 aa  90.5  2e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_4302  signal transduction histidine kinase  39.66 
 
 
343 aa  90.9  2e-17  Cyanothece sp. PCC 7425  Bacteria  normal  0.219335  normal  0.321802 
 
 
-
 
NC_011769  DvMF_1460  putative PAS/PAC sensor protein  40.34 
 
 
474 aa  90.5  2e-17  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.81808 
 
 
-
 
NC_011769  DvMF_2677  response regulator receiver sensor hybrid histidine kinase  37.29 
 
 
636 aa  90.9  2e-17  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.068934 
 
 
-
 
NC_007519  Dde_1631  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  35.85 
 
 
561 aa  90.1  3e-17  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.608678  n/a   
 
 
-
 
NC_007413  Ava_3003  PAS/PAC sensor hybrid histidine kinase  39.5 
 
 
498 aa  89.7  4e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1844  two component transcriptional regulator, LytTR family  28.63 
 
 
236 aa  89.7  4e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0428  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  40.68 
 
 
455 aa  89.7  4e-17  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0439  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  40.68 
 
 
455 aa  89.7  4e-17  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.444664 
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  36.36 
 
 
229 aa  89.7  4e-17  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_011729  PCC7424_1114  response regulator receiver sensor signal transduction histidine kinase  40.3 
 
 
373 aa  89.4  5e-17  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013132  Cpin_4010  two component transcriptional regulator, LytTR family  28.38 
 
 
231 aa  89.4  6e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0569074  decreased coverage  0.00157623 
 
 
-
 
NC_013947  Snas_3775  response regulator receiver and ANTAR domain-containing protein  36.36 
 
 
207 aa  89.4  6e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.665226  normal  0.0118196 
 
 
-
 
NC_014210  Ndas_3159  response regulator receiver and ANTAR domain protein  36.3 
 
 
212 aa  89.4  6e-17  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_05930  DNA-binding response regulator, LuxR family protein  36.43 
 
 
207 aa  89  7e-17  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  40.34 
 
 
196 aa  88.6  9e-17  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  38.02 
 
 
196 aa  88.2  1e-16  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2035  response regulator receiver/ANTAR domain-containing protein  37.19 
 
 
199 aa  88.2  1e-16  Frankia sp. EAN1pec  Bacteria  normal  normal  0.480822 
 
 
-
 
NC_007908  Rfer_0895  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  38.21 
 
 
701 aa  87  2e-16  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0434  putative PAS/PAC sensor protein  40.83 
 
 
458 aa  87.8  2e-16  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0764  two component transcriptional regulator, LytTR family  29.55 
 
 
245 aa  87.4  2e-16  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.626213 
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  34.71 
 
 
205 aa  86.7  3e-16  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_013173  Dbac_0866  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  41.38 
 
 
701 aa  86.7  3e-16  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.711392  n/a   
 
 
-
 
NC_007777  Francci3_1618  response regulator receiver/ANTAR domain-containing protein  36.36 
 
 
199 aa  86.7  3e-16  Frankia sp. CcI3  Bacteria  normal  0.144201  normal  0.292856 
 
 
-
 
NC_011831  Cagg_2047  response regulator receiver and ANTAR domain protein  38.84 
 
 
191 aa  86.7  3e-16  Chloroflexus aggregans DSM 9485  Bacteria  unclonable  0.000000169009  normal 
 
 
-
 
NC_013132  Cpin_0268  sigma54 specific transcriptional regulator, Fis family  38.6 
 
 
651 aa  86.7  3e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_2645  putative PAS/PAC sensor protein  36.21 
 
 
336 aa  86.3  4e-16  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007796  Mhun_3039  response regulator receiver sensor signal transduction histidine kinase  38.26 
 
 
355 aa  86.7  4e-16  Methanospirillum hungatei JF-1  Archaea  normal  0.610599  normal 
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  36.36 
 
 
204 aa  86.3  4e-16  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  34.71 
 
 
213 aa  85.9  5e-16  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_009767  Rcas_3658  response regulator receiver/ANTAR domain-containing protein  36.29 
 
 
194 aa  85.5  7e-16  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.568485 
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  34.71 
 
 
210 aa  85.5  7e-16  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  34.71 
 
 
210 aa  85.5  7e-16  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  34.71 
 
 
210 aa  85.5  7e-16  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_009972  Haur_4357  response regulator receiver/ANTAR domain-containing protein  34.62 
 
 
198 aa  85.5  7e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.480943  n/a   
 
 
-
 
NC_009441  Fjoh_1679  LytTR family two component transcriptional regulator  27.97 
 
 
238 aa  85.5  8e-16  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_3151  response regulator receiver  35.48 
 
 
206 aa  85.5  9e-16  Salinispora tropica CNB-440  Bacteria  normal  normal  0.332536 
 
 
-
 
NC_007333  Tfu_1181  response regulator receiver  36.36 
 
 
207 aa  85.1  0.000000000000001  Thermobifida fusca YX  Bacteria  normal  0.928438  n/a   
 
 
-
 
NC_009712  Mboo_1808  putative PAS/PAC sensor protein  39.83 
 
 
603 aa  85.1  0.000000000000001  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.268482 
 
 
-
 
NC_014165  Tbis_1468  response regulator receiver and ANTAR domain-containing protein  32.7 
 
 
197 aa  83.6  0.000000000000003  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_3510  PAS/PAC sensor hybrid histidine kinase  40.46 
 
 
521 aa  83.6  0.000000000000003  Polaromonas sp. JS666  Bacteria  normal  normal  0.269968 
 
 
-
 
NC_009953  Sare_3378  response regulator receiver/ANTAR domain-containing protein  35.48 
 
 
206 aa  83.2  0.000000000000004  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0248143 
 
 
-
 
NC_009523  RoseRS_4102  response regulator receiver/ANTAR domain-containing protein  35.48 
 
 
194 aa  83.2  0.000000000000004  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011832  Mpal_0573  response regulator receiver protein  38.21 
 
 
261 aa  82.8  0.000000000000005  Methanosphaerula palustris E1-9c  Archaea  normal  0.666159  normal  0.332219 
 
 
-
 
NC_009712  Mboo_1311  putative PAS/PAC sensor protein  38.66 
 
 
340 aa  82.4  0.000000000000006  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.187179 
 
 
-
 
NC_013510  Tcur_2860  response regulator receiver and ANTAR domain protein  34.71 
 
 
214 aa  82.4  0.000000000000007  Thermomonospora curvata DSM 43183  Bacteria  normal  0.153721  n/a   
 
 
-
 
NC_013730  Slin_6269  two component transcriptional regulator, LytTR family  25.2 
 
 
228 aa  82.4  0.000000000000007  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_1345  LytTR family two component transcriptional regulator  26.85 
 
 
234 aa  82.4  0.000000000000007  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1360  putative PAS/PAC sensor protein  36.8 
 
 
429 aa  81.3  0.00000000000001  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00110028  hitchhiker  0.000665614 
 
 
-
 
NC_009712  Mboo_1358  putative PAS/PAC sensor protein  39.47 
 
 
404 aa  81.3  0.00000000000001  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.873442  normal  0.0258422 
 
 
-
 
NC_013132  Cpin_4307  sigma54 specific transcriptional regulator, Fis family  40.87 
 
 
635 aa  81.3  0.00000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.056389 
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  32.26 
 
 
200 aa  80.9  0.00000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0577  two component transcriptional regulator, LytTR family  26.1 
 
 
231 aa  80.9  0.00000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0826  two component transcriptional regulator, LytTR family  25.4 
 
 
235 aa  80.5  0.00000000000002  Spirosoma linguale DSM 74  Bacteria  normal  0.398179  normal 
 
 
-
 
NC_007575  Suden_1012  response regulator receiver domain-containing protein  34.95 
 
 
109 aa  80.5  0.00000000000002  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_11030  response regulator with putative antiterminator output domain  35.25 
 
 
198 aa  80.9  0.00000000000002  Micrococcus luteus NCTC 2665  Bacteria  normal  0.241703  n/a   
 
 
-
 
NC_007908  Rfer_0893  response regulator receiver sensor signal transduction histidine kinase  35.77 
 
 
359 aa  79.7  0.00000000000004  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_3208  response regulator receiver and ANTAR domain protein  34.65 
 
 
200 aa  79.7  0.00000000000005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  35.25 
 
 
205 aa  79  0.00000000000006  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1242  multi-sensor signal transduction histidine kinase  34.23 
 
 
472 aa  79.3  0.00000000000006  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.41521  normal 
 
 
-
 
NC_009712  Mboo_1007  putative GAF sensor protein  38.71 
 
 
311 aa  78.6  0.00000000000008  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.164021  normal  0.860345 
 
 
-
 
NC_009712  Mboo_2336  response regulator receiver protein  41.8 
 
 
355 aa  79  0.00000000000008  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.404573  normal  0.642469 
 
 
-
 
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