More than 300 homologs were found in PanDaTox collection
for query gene Mboo_1007 on replicon NC_009712
Organism: Candidatus Methanoregula boonei 6A8



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009712  Mboo_1007  putative GAF sensor protein  100 
 
 
311 aa  632  1e-180  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.164021  normal  0.860345 
 
 
-
 
NC_009712  Mboo_1813  response regulator receiver protein  39.55 
 
 
316 aa  192  8e-48  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.445517  normal  0.445863 
 
 
-
 
NC_009483  Gura_1730  multi-sensor signal transduction histidine kinase  32.19 
 
 
591 aa  137  3.0000000000000003e-31  Geobacter uraniireducens Rf4  Bacteria  normal  0.319599  n/a   
 
 
-
 
NC_009972  Haur_0985  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  49.28 
 
 
704 aa  128  1.0000000000000001e-28  Herpetosiphon aurantiacus ATCC 23779  Bacteria  decreased coverage  0.000494124  n/a   
 
 
-
 
NC_007796  Mhun_3039  response regulator receiver sensor signal transduction histidine kinase  44.52 
 
 
355 aa  126  4.0000000000000003e-28  Methanospirillum hungatei JF-1  Archaea  normal  0.610599  normal 
 
 
-
 
NC_009712  Mboo_1311  putative PAS/PAC sensor protein  44.58 
 
 
340 aa  125  8.000000000000001e-28  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.187179 
 
 
-
 
NC_007796  Mhun_2637  putative PAS/PAC sensor protein  46.62 
 
 
461 aa  125  9e-28  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007413  Ava_0066  response regulator receiver sensor signal transduction histidine kinase  50.78 
 
 
377 aa  125  1e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  0.359193  normal  0.0132857 
 
 
-
 
NC_008609  Ppro_3008  multi-sensor hybrid histidine kinase  45.07 
 
 
953 aa  124  2e-27  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_2285  response regulator receiver  49.61 
 
 
130 aa  121  9.999999999999999e-27  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000158247  n/a   
 
 
-
 
NC_009483  Gura_2117  putative PAS/PAC sensor protein  47.06 
 
 
257 aa  120  3e-26  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_0841  response regulator receiver  48.44 
 
 
135 aa  120  3.9999999999999996e-26  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_009712  Mboo_1808  putative PAS/PAC sensor protein  50.78 
 
 
603 aa  119  4.9999999999999996e-26  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.268482 
 
 
-
 
NC_011769  DvMF_1460  putative PAS/PAC sensor protein  44.29 
 
 
474 aa  118  9.999999999999999e-26  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.81808 
 
 
-
 
NC_007955  Mbur_1557  response regulator receiver  46.21 
 
 
131 aa  117  1.9999999999999998e-25  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000000412225  n/a   
 
 
-
 
NC_011769  DvMF_2677  response regulator receiver sensor hybrid histidine kinase  49.59 
 
 
636 aa  117  3e-25  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.068934 
 
 
-
 
NC_007413  Ava_4326  PAS/PAC sensor hybrid histidine kinase  39.56 
 
 
571 aa  116  3.9999999999999997e-25  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0428  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  47.93 
 
 
455 aa  115  7.999999999999999e-25  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_4564  response regulator receiver sensor signal transduction histidine kinase  46.88 
 
 
376 aa  114  1.0000000000000001e-24  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.531352 
 
 
-
 
NC_013161  Cyan8802_0439  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  47.11 
 
 
455 aa  112  6e-24  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.444664 
 
 
-
 
NC_007796  Mhun_0455  response regulator receiver domain-containing protein  45.67 
 
 
238 aa  112  9e-24  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.21261 
 
 
-
 
NC_007413  Ava_3003  PAS/PAC sensor hybrid histidine kinase  43.61 
 
 
498 aa  112  1.0000000000000001e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2282  histidine kinase  44.44 
 
 
667 aa  111  1.0000000000000001e-23  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1497  putative PAS/PAC sensor protein  45.89 
 
 
380 aa  111  1.0000000000000001e-23  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.506851  normal  0.137069 
 
 
-
 
NC_014248  Aazo_1725  multi-sensor signal transduction histidine kinase  43.7 
 
 
499 aa  111  2.0000000000000002e-23  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A3448  putative transcriptional regulator  45.97 
 
 
143 aa  110  3e-23  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.132297  normal  0.0606491 
 
 
-
 
NC_007796  Mhun_1724  response regulator receiver domain-containing protein  45.97 
 
 
352 aa  110  3e-23  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3178  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  44.09 
 
 
426 aa  110  3e-23  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_2709  two component signal transduction response regulator  44.35 
 
 
429 aa  110  4.0000000000000004e-23  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_1114  response regulator receiver sensor signal transduction histidine kinase  48.74 
 
 
373 aa  110  4.0000000000000004e-23  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009712  Mboo_1242  multi-sensor signal transduction histidine kinase  44.62 
 
 
472 aa  110  4.0000000000000004e-23  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.41521  normal 
 
 
-
 
NC_008554  Sfum_2639  multi-sensor hybrid histidine kinase  28.89 
 
 
817 aa  109  7.000000000000001e-23  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3896  two component transcriptional regulator, LytTR family  48.39 
 
 
245 aa  108  1e-22  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.356034 
 
 
-
 
NC_010623  Bphy_4529  multi-sensor hybrid histidine kinase  44.44 
 
 
989 aa  107  2e-22  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0895  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  43.41 
 
 
701 aa  107  3e-22  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3510  PAS/PAC sensor hybrid histidine kinase  42.96 
 
 
521 aa  107  3e-22  Polaromonas sp. JS666  Bacteria  normal  normal  0.269968 
 
 
-
 
NC_011884  Cyan7425_4302  signal transduction histidine kinase  43.7 
 
 
343 aa  107  4e-22  Cyanothece sp. PCC 7425  Bacteria  normal  0.219335  normal  0.321802 
 
 
-
 
NC_011832  Mpal_1773  response regulator receiver sensor signal transduction histidine kinase  40.14 
 
 
386 aa  107  4e-22  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_009712  Mboo_1528  response regulator receiver protein  46.88 
 
 
450 aa  106  6e-22  Candidatus Methanoregula boonei 6A8  Archaea  hitchhiker  0.00374994  normal  0.77554 
 
 
-
 
NC_011884  Cyan7425_2337  signal transduction histidine kinase  40.44 
 
 
352 aa  105  8e-22  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1360  putative PAS/PAC sensor protein  41.43 
 
 
429 aa  105  9e-22  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00110028  hitchhiker  0.000665614 
 
 
-
 
NC_009712  Mboo_1807  putative PAS/PAC sensor protein  44.88 
 
 
258 aa  103  3e-21  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.254511 
 
 
-
 
NC_007948  Bpro_3511  response regulator receiver sensor signal transduction histidine kinase  46.22 
 
 
384 aa  103  4e-21  Polaromonas sp. JS666  Bacteria  normal  normal  0.253652 
 
 
-
 
NC_007519  Dde_3002  putative PAS/PAC sensor protein  39.18 
 
 
469 aa  102  6e-21  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.345319  n/a   
 
 
-
 
NC_011832  Mpal_0048  putative PAS/PAC sensor protein  47.11 
 
 
255 aa  102  1e-20  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_010551  BamMC406_1235  multi-sensor hybrid histidine kinase  42.22 
 
 
989 aa  100  2e-20  Burkholderia ambifaria MC40-6  Bacteria  normal  0.172784  normal 
 
 
-
 
NC_007955  Mbur_0883  response regulator receiver  38.3 
 
 
273 aa  100  3e-20  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_008751  Dvul_0434  putative PAS/PAC sensor protein  38.41 
 
 
458 aa  100  4e-20  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_2686  putative PAS/PAC sensor protein  34.59 
 
 
337 aa  99.8  5e-20  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.209027 
 
 
-
 
NC_009712  Mboo_1358  putative PAS/PAC sensor protein  41.86 
 
 
404 aa  98.2  2e-19  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.873442  normal  0.0258422 
 
 
-
 
NC_007908  Rfer_0893  response regulator receiver sensor signal transduction histidine kinase  41.78 
 
 
359 aa  97.4  3e-19  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0866  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  42.86 
 
 
701 aa  96.7  5e-19  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.711392  n/a   
 
 
-
 
NC_007355  Mbar_A2510  transcriptional regulator  42.11 
 
 
157 aa  95.9  8e-19  Methanosarcina barkeri str. Fusaro  Archaea  decreased coverage  0.000843612  normal  0.354799 
 
 
-
 
NC_009712  Mboo_1488  response regulator receiver protein  39.84 
 
 
450 aa  95.5  9e-19  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.379239 
 
 
-
 
NC_009712  Mboo_0900  response regulator receiver protein  43.55 
 
 
126 aa  95.1  1e-18  Candidatus Methanoregula boonei 6A8  Archaea  normal  hitchhiker  0.000110071 
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  43.55 
 
 
197 aa  95.1  1e-18  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_009712  Mboo_1912  response regulator receiver protein  42.54 
 
 
263 aa  94.7  2e-18  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.181503  normal  0.732361 
 
 
-
 
NC_007955  Mbur_2294  response regulator receiver  44.64 
 
 
134 aa  93.2  5e-18  Methanococcoides burtonii DSM 6242  Archaea  normal  0.371138  n/a   
 
 
-
 
NC_011832  Mpal_2212  response regulator receiver protein  44.44 
 
 
122 aa  91.7  2e-17  Methanosphaerula palustris E1-9c  Archaea  normal  0.092497  normal  0.290386 
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  43.44 
 
 
196 aa  91.3  2e-17  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_2407  response regulator receiver protein  45.53 
 
 
182 aa  91.3  2e-17  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_011831  Cagg_2933  response regulator receiver and ANTAR domain protein  42.98 
 
 
194 aa  91.3  2e-17  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0803562  normal  0.225953 
 
 
-
 
NC_009921  Franean1_2035  response regulator receiver/ANTAR domain-containing protein  39.17 
 
 
199 aa  90.9  3e-17  Frankia sp. EAN1pec  Bacteria  normal  normal  0.480822 
 
 
-
 
NC_011831  Cagg_2047  response regulator receiver and ANTAR domain protein  42.28 
 
 
191 aa  90.9  3e-17  Chloroflexus aggregans DSM 9485  Bacteria  unclonable  0.000000169009  normal 
 
 
-
 
NC_009767  Rcas_3658  response regulator receiver/ANTAR domain-containing protein  40 
 
 
194 aa  90.1  4e-17  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.568485 
 
 
-
 
NC_013174  Jden_1223  response regulator receiver and ANTAR domain protein  38.64 
 
 
229 aa  90.1  4e-17  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.788892 
 
 
-
 
NC_009523  RoseRS_4102  response regulator receiver/ANTAR domain-containing protein  40 
 
 
194 aa  89.7  6e-17  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011832  Mpal_0573  response regulator receiver protein  38.58 
 
 
261 aa  89  8e-17  Methanosphaerula palustris E1-9c  Archaea  normal  0.666159  normal  0.332219 
 
 
-
 
NC_009953  Sare_3378  response regulator receiver/ANTAR domain-containing protein  41.8 
 
 
206 aa  89  9e-17  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0248143 
 
 
-
 
NC_007333  Tfu_1181  response regulator receiver  40.16 
 
 
207 aa  88.6  1e-16  Thermobifida fusca YX  Bacteria  normal  0.928438  n/a   
 
 
-
 
NC_007519  Dde_1631  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  38.52 
 
 
561 aa  88.2  1e-16  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.608678  n/a   
 
 
-
 
NC_007575  Suden_0616  two component transcriptional regulator  35.38 
 
 
249 aa  89  1e-16  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  40.98 
 
 
196 aa  89  1e-16  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_3208  response regulator receiver and ANTAR domain protein  39.69 
 
 
200 aa  88.2  2e-16  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_0834  response regulator receiver  39.84 
 
 
134 aa  87.8  2e-16  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000017528  n/a   
 
 
-
 
NC_009972  Haur_4203  response regulator receiver/ANTAR domain-containing protein  39.34 
 
 
195 aa  87.8  2e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.793788  n/a   
 
 
-
 
NC_009380  Strop_3151  response regulator receiver  40.98 
 
 
206 aa  87.8  2e-16  Salinispora tropica CNB-440  Bacteria  normal  normal  0.332536 
 
 
-
 
NC_012669  Bcav_2208  response regulator receiver and ANTAR domain protein  38.21 
 
 
220 aa  87.4  3e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_1618  response regulator receiver/ANTAR domain-containing protein  38.33 
 
 
199 aa  87  3e-16  Frankia sp. CcI3  Bacteria  normal  0.144201  normal  0.292856 
 
 
-
 
NC_014230  CA2559_08681  transcriptional regulator  38.33 
 
 
240 aa  87.4  3e-16  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.803849  n/a   
 
 
-
 
NC_013037  Dfer_1630  two component transcriptional regulator, LytTR family  37.19 
 
 
243 aa  87  4e-16  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.192215 
 
 
-
 
NC_013510  Tcur_2860  response regulator receiver and ANTAR domain protein  38.71 
 
 
214 aa  86.7  4e-16  Thermomonospora curvata DSM 43183  Bacteria  normal  0.153721  n/a   
 
 
-
 
NC_007413  Ava_3669  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  36.89 
 
 
432 aa  87  4e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2085  putative two component, sigma54 specific, transcriptional regulator, Fis family  38.98 
 
 
457 aa  86.7  4e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3159  response regulator receiver and ANTAR domain protein  40.16 
 
 
212 aa  87  4e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  38.52 
 
 
204 aa  85.5  0.000000000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_05930  DNA-binding response regulator, LuxR family protein  35.38 
 
 
207 aa  85.5  0.000000000000001  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3671  Sigma 54 interacting domain protein  37.78 
 
 
657 aa  84.3  0.000000000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_2576  response regulator receiver domain-containing protein  38.46 
 
 
122 aa  84.7  0.000000000000002  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_013530  Xcel_1506  response regulator receiver and ANTAR domain protein  36.29 
 
 
220 aa  84.7  0.000000000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_0118  putative PAS/PAC sensor protein  39.84 
 
 
265 aa  84.3  0.000000000000003  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_011138  MADE_01100  sensory box/GGDEF family protein  41.8 
 
 
798 aa  84  0.000000000000003  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_4820  two component transcriptional regulator, LytTR family  37.7 
 
 
244 aa  83.6  0.000000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.334432  normal 
 
 
-
 
NC_013132  Cpin_1348  two component, sigma54 specific, transcriptional regulator, Fis family  35.33 
 
 
461 aa  83.6  0.000000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_0115  two component, sigma54 specific, transcriptional regulator, Fis family  40 
 
 
481 aa  83.6  0.000000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_1977  response regulator receiver and ANTAR domain protein  38.14 
 
 
227 aa  82.8  0.000000000000007  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.239234  normal 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  38.33 
 
 
210 aa  82.4  0.000000000000008  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  38.33 
 
 
210 aa  82.4  0.000000000000009  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1468  response regulator receiver and ANTAR domain-containing protein  37.7 
 
 
197 aa  82.4  0.000000000000009  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  38.33 
 
 
210 aa  82.4  0.000000000000009  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
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