More than 300 homologs were found in PanDaTox collection
for query gene Dfer_4820 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013037  Dfer_4820  two component transcriptional regulator, LytTR family  100 
 
 
244 aa  491  9.999999999999999e-139  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.334432  normal 
 
 
-
 
NC_013730  Slin_3896  two component transcriptional regulator, LytTR family  36.33 
 
 
245 aa  154  1e-36  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.356034 
 
 
-
 
NC_014230  CA2559_08681  transcriptional regulator  31.88 
 
 
240 aa  132  6e-30  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.803849  n/a   
 
 
-
 
NC_013730  Slin_3427  two component transcriptional regulator, LytTR family  29.27 
 
 
256 aa  118  9e-26  Spirosoma linguale DSM 74  Bacteria  normal  0.239231  normal 
 
 
-
 
NC_013132  Cpin_6068  response regulator receiver protein  27.16 
 
 
248 aa  103  4e-21  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5058  two component transcriptional regulator, LytTR family  28.57 
 
 
247 aa  100  2e-20  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.0000256301  normal  0.0140106 
 
 
-
 
NC_009441  Fjoh_1441  LytTR family two component transcriptional regulator  29.22 
 
 
248 aa  96.3  4e-19  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_0191  two component transcriptional regulator, LytTR family  28.19 
 
 
234 aa  91.7  1e-17  Spirosoma linguale DSM 74  Bacteria  normal  0.20678  normal 
 
 
-
 
NC_009441  Fjoh_2165  LytTR family two component transcriptional regulator  29.26 
 
 
235 aa  87.4  2e-16  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0607611  n/a   
 
 
-
 
NC_013730  Slin_3671  Sigma 54 interacting domain protein  41.38 
 
 
657 aa  86.3  4e-16  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_05930  DNA-binding response regulator, LuxR family protein  36.97 
 
 
207 aa  86.3  4e-16  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG1016  response regulator  30.52 
 
 
244 aa  85.1  0.000000000000001  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1007  putative GAF sensor protein  37.7 
 
 
311 aa  83.6  0.000000000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.164021  normal  0.860345 
 
 
-
 
NC_008609  Ppro_3008  multi-sensor hybrid histidine kinase  33.56 
 
 
953 aa  83.6  0.000000000000003  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_04910  two-component system response regulator  27.46 
 
 
236 aa  81.3  0.00000000000001  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.981835  n/a   
 
 
-
 
NC_011831  Cagg_1360  putative PAS/PAC sensor protein  36.07 
 
 
429 aa  80.5  0.00000000000002  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00110028  hitchhiker  0.000665614 
 
 
-
 
NC_013132  Cpin_4010  two component transcriptional regulator, LytTR family  27.57 
 
 
231 aa  80.5  0.00000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0569074  decreased coverage  0.00157623 
 
 
-
 
NC_009441  Fjoh_5028  LytTR family two component transcriptional regulator  26.56 
 
 
237 aa  80.1  0.00000000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.967214  n/a   
 
 
-
 
NC_009712  Mboo_1311  putative PAS/PAC sensor protein  32.17 
 
 
340 aa  80.1  0.00000000000003  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.187179 
 
 
-
 
NC_013037  Dfer_5458  putative two component, sigma54 specific, transcriptional regulator, Fis family  38.79 
 
 
582 aa  79.3  0.00000000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.336827 
 
 
-
 
NC_013132  Cpin_2085  putative two component, sigma54 specific, transcriptional regulator, Fis family  41.23 
 
 
457 aa  79.3  0.00000000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4307  sigma54 specific transcriptional regulator, Fis family  38.52 
 
 
635 aa  79  0.00000000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.056389 
 
 
-
 
NC_007796  Mhun_2686  putative PAS/PAC sensor protein  33.33 
 
 
337 aa  79  0.00000000000007  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.209027 
 
 
-
 
NC_011832  Mpal_2212  response regulator receiver protein  34.48 
 
 
122 aa  78.6  0.00000000000008  Methanosphaerula palustris E1-9c  Archaea  normal  0.092497  normal  0.290386 
 
 
-
 
NC_009712  Mboo_0900  response regulator receiver protein  35 
 
 
126 aa  78.2  0.0000000000001  Candidatus Methanoregula boonei 6A8  Archaea  normal  hitchhiker  0.000110071 
 
 
-
 
NC_013730  Slin_1723  two component transcriptional regulator, LytTR family  29.53 
 
 
232 aa  77.4  0.0000000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_5133  two component transcriptional regulator, LytTR family  29.27 
 
 
227 aa  76.6  0.0000000000004  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.983168 
 
 
-
 
NC_007955  Mbur_2285  response regulator receiver  32.23 
 
 
130 aa  76.3  0.0000000000004  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000158247  n/a   
 
 
-
 
NC_007413  Ava_4326  PAS/PAC sensor hybrid histidine kinase  33.33 
 
 
571 aa  76.3  0.0000000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2242  two component transcriptional regulator, LytTR family  31.73 
 
 
244 aa  75.9  0.0000000000005  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_3510  PAS/PAC sensor hybrid histidine kinase  33.62 
 
 
521 aa  75.9  0.0000000000006  Polaromonas sp. JS666  Bacteria  normal  normal  0.269968 
 
 
-
 
NC_013132  Cpin_4365  two component, sigma54 specific, transcriptional regulator, Fis family  36.21 
 
 
471 aa  75.1  0.0000000000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.231326 
 
 
-
 
NC_013132  Cpin_4853  two component, sigma54 specific, transcriptional regulator, Fis family  36.52 
 
 
457 aa  74.7  0.000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.231814  hitchhiker  0.00735887 
 
 
-
 
NC_013730  Slin_4327  transcriptional regulator, NifA subfamily, Fis Family  37.7 
 
 
875 aa  74.7  0.000000000001  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.184763 
 
 
-
 
NC_007575  Suden_0616  two component transcriptional regulator  28.97 
 
 
249 aa  74.7  0.000000000001  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1497  putative PAS/PAC sensor protein  33.61 
 
 
380 aa  75.1  0.000000000001  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.506851  normal  0.137069 
 
 
-
 
NC_008255  CHU_2575  two-component response regulator  31.12 
 
 
241 aa  74.7  0.000000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_0115  two component, sigma54 specific, transcriptional regulator, Fis family  36.13 
 
 
481 aa  73.9  0.000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_2709  two component signal transduction response regulator  33.08 
 
 
429 aa  73.6  0.000000000003  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_1724  response regulator receiver domain-containing protein  30.5 
 
 
352 aa  73.6  0.000000000003  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_013037  Dfer_5460  sigma54 specific transcriptional regulator, Fis family  35.96 
 
 
650 aa  73.6  0.000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.665291  normal  0.225769 
 
 
-
 
NC_011832  Mpal_0048  putative PAS/PAC sensor protein  33.33 
 
 
255 aa  73.6  0.000000000003  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_009712  Mboo_0913  response regulator receiver protein  30.51 
 
 
124 aa  73.2  0.000000000004  Candidatus Methanoregula boonei 6A8  Archaea  normal  hitchhiker  0.0000000115879 
 
 
-
 
NC_007517  Gmet_2697  LytR/AlgR family transcriptional regulator  28.51 
 
 
240 aa  72.8  0.000000000004  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_3511  response regulator receiver sensor signal transduction histidine kinase  33.9 
 
 
384 aa  73.2  0.000000000004  Polaromonas sp. JS666  Bacteria  normal  normal  0.253652 
 
 
-
 
NC_013132  Cpin_1177  two component transcriptional regulator, LytTR family  26.15 
 
 
231 aa  73.2  0.000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1348  two component, sigma54 specific, transcriptional regulator, Fis family  28.84 
 
 
461 aa  73.2  0.000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_3280  two component transcriptional regulator, LytTR family  29.67 
 
 
245 aa  73.2  0.000000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_0841  response regulator receiver  32.2 
 
 
135 aa  72.4  0.000000000006  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_007796  Mhun_3039  response regulator receiver sensor signal transduction histidine kinase  32.52 
 
 
355 aa  72  0.000000000008  Methanospirillum hungatei JF-1  Archaea  normal  0.610599  normal 
 
 
-
 
NC_013730  Slin_0421  two component transcriptional regulator, LytTR family  28.5 
 
 
227 aa  72  0.000000000009  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_2172  LytR/AlgR family transcriptional regulator  25.38 
 
 
252 aa  71.2  0.00000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0721488  normal  0.0255714 
 
 
-
 
NC_007796  Mhun_2637  putative PAS/PAC sensor protein  32.23 
 
 
461 aa  71.6  0.00000000001  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_010571  Oter_2328  LytTR family two component transcriptional regulator  24.9 
 
 
255 aa  71.6  0.00000000001  Opitutus terrae PB90-1  Bacteria  normal  0.261765  decreased coverage  0.00199939 
 
 
-
 
NC_011726  PCC8801_0428  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  36.07 
 
 
455 aa  71.2  0.00000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0439  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  36.07 
 
 
455 aa  70.5  0.00000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.444664 
 
 
-
 
NC_013037  Dfer_0597  two component transcriptional regulator, LytTR family  27.36 
 
 
242 aa  70.9  0.00000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.0722811 
 
 
-
 
NC_014230  CA2559_11558  two-component system response regulator  30.34 
 
 
233 aa  70.9  0.00000000002  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1358  putative PAS/PAC sensor protein  37.07 
 
 
404 aa  70.1  0.00000000003  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.873442  normal  0.0258422 
 
 
-
 
NC_013061  Phep_4189  LytTr DNA-binding region  26.1 
 
 
231 aa  69.7  0.00000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.537023 
 
 
-
 
NC_011884  Cyan7425_3178  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  31.67 
 
 
426 aa  69.7  0.00000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_4408  two component transcriptional regulator, LytTR family  25.96 
 
 
268 aa  69.7  0.00000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_1375  response regulator receiver protein  24.6 
 
 
239 aa  69.7  0.00000000004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2282  histidine kinase  33.06 
 
 
667 aa  69.7  0.00000000004  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_0268  sigma54 specific transcriptional regulator, Fis family  34.03 
 
 
651 aa  69.7  0.00000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0738  response regulator receiver protein  37.74 
 
 
227 aa  69.3  0.00000000005  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.0000561574  n/a   
 
 
-
 
NC_013132  Cpin_1844  two component transcriptional regulator, LytTR family  26.87 
 
 
236 aa  69.3  0.00000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_1645  two component transcriptional regulator, LytTR family  27.42 
 
 
232 aa  69.3  0.00000000005  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4280  response regulator receiver protein  24.9 
 
 
269 aa  69.3  0.00000000005  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013733  Slin_6983  two component transcriptional regulator, LytTR family  25.33 
 
 
230 aa  68.9  0.00000000006  Spirosoma linguale DSM 74  Bacteria  normal  0.659349  normal 
 
 
-
 
NC_009712  Mboo_1807  putative PAS/PAC sensor protein  29.17 
 
 
258 aa  68.9  0.00000000007  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.254511 
 
 
-
 
NC_009483  Gura_1730  multi-sensor signal transduction histidine kinase  30 
 
 
591 aa  68.9  0.00000000008  Geobacter uraniireducens Rf4  Bacteria  normal  0.319599  n/a   
 
 
-
 
NC_014230  CA2559_11553  two-component system response regulator  26.67 
 
 
237 aa  68.2  0.0000000001  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_0455  response regulator receiver domain-containing protein  35.48 
 
 
238 aa  68.6  0.0000000001  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.21261 
 
 
-
 
NC_013730  Slin_0826  two component transcriptional regulator, LytTR family  30.43 
 
 
235 aa  68.2  0.0000000001  Spirosoma linguale DSM 74  Bacteria  normal  0.398179  normal 
 
 
-
 
NC_008146  Mmcs_4051  response regulator receiver protein  24.9 
 
 
269 aa  68.2  0.0000000001  Mycobacterium sp. MCS  Bacteria  normal  0.243327  n/a   
 
 
-
 
NC_009712  Mboo_1808  putative PAS/PAC sensor protein  31.4 
 
 
603 aa  68.2  0.0000000001  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.268482 
 
 
-
 
NC_013441  Gbro_0699  response regulator receiver  25.29 
 
 
275 aa  68.6  0.0000000001  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4126  response regulator receiver protein  24.9 
 
 
269 aa  68.2  0.0000000001  Mycobacterium sp. KMS  Bacteria  normal  0.217512  normal  0.408771 
 
 
-
 
NC_009441  Fjoh_4564  LytTR family two component transcriptional regulator  26.02 
 
 
233 aa  67.4  0.0000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0221995  n/a   
 
 
-
 
NC_011886  Achl_1393  two component transcriptional regulator, LytTR family  25.3 
 
 
238 aa  67.8  0.0000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000000160197 
 
 
-
 
NC_011884  Cyan7425_2337  signal transduction histidine kinase  31.9 
 
 
352 aa  67.4  0.0000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_1114  response regulator receiver sensor signal transduction histidine kinase  28.03 
 
 
373 aa  67.8  0.0000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011769  DvMF_2677  response regulator receiver sensor hybrid histidine kinase  30.25 
 
 
636 aa  67.4  0.0000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.068934 
 
 
-
 
NC_009712  Mboo_1488  response regulator receiver protein  27.27 
 
 
450 aa  67.4  0.0000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.379239 
 
 
-
 
NC_008751  Dvul_0434  putative PAS/PAC sensor protein  27.27 
 
 
458 aa  67.8  0.0000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_0974  LytTR family two component transcriptional regulator  30.41 
 
 
237 aa  66.6  0.0000000003  Clostridium phytofermentans ISDg  Bacteria  normal  0.118297  n/a   
 
 
-
 
NC_013132  Cpin_3628  two component transcriptional regulator, LytTR family  27 
 
 
235 aa  67  0.0000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0184746 
 
 
-
 
NC_013132  Cpin_3396  two component transcriptional regulator, LytTR family  27.94 
 
 
243 aa  67  0.0000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.655263 
 
 
-
 
NC_013061  Phep_0217  LytTr DNA-binding region  35.64 
 
 
250 aa  66.6  0.0000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.630653 
 
 
-
 
NC_013037  Dfer_5358  two component transcriptional regulator, LytTR family  30.77 
 
 
235 aa  66.6  0.0000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2639  multi-sensor hybrid histidine kinase  32.17 
 
 
817 aa  66.2  0.0000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_4302  signal transduction histidine kinase  29.08 
 
 
343 aa  66.2  0.0000000005  Cyanothece sp. PCC 7425  Bacteria  normal  0.219335  normal  0.321802 
 
 
-
 
NC_008228  Patl_1149  response regulator receiver protein  25 
 
 
239 aa  65.9  0.0000000006  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4282  LytTR family two component transcriptional regulator  26.84 
 
 
232 aa  65.5  0.0000000008  Flavobacterium johnsoniae UW101  Bacteria  normal  0.442781  n/a   
 
 
-
 
NC_009972  Haur_0985  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  29.75 
 
 
704 aa  65.5  0.0000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  decreased coverage  0.000494124  n/a   
 
 
-
 
NC_009441  Fjoh_4134  LytTR family two component transcriptional regulator  28.57 
 
 
243 aa  65.1  0.0000000009  Flavobacterium johnsoniae UW101  Bacteria  normal  0.291369  n/a   
 
 
-
 
NC_009441  Fjoh_3968  LytTR family two component transcriptional regulator  31.03 
 
 
229 aa  65.1  0.0000000009  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0978404  n/a   
 
 
-
 
NC_011725  BCB4264_A3169  regulatory protein VanR  36.89 
 
 
229 aa  65.5  0.0000000009  Bacillus cereus B4264  Bacteria  normal  0.16404  n/a   
 
 
-
 
NC_011138  MADE_01100  sensory box/GGDEF family protein  29.41 
 
 
798 aa  65.1  0.0000000009  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>