| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4853 |
|---|
| Symbol | |
|---|
| ID | 8361029 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 6070333 |
|---|
| End bp | 6071706 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644967003 |
|---|
| Product | two component, sigma54 specific, transcriptional regulator, Fis family |
|---|
| Protein accession | YP_003124488 |
|---|
| Protein GI | 256423835 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.231814 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.00735887 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGTA AAGGAAACAT ATTGATAGTT GAAGACGAAT TTATTGTCGC AAATGATCTG
CGTCTTATGC TTCAGAAAGC AGGATACGCC ATCTGTGGCA TTGCGGCTTC TGTTGTGCAG
GCGCGTGCGC TGATTGAAAA ACACAGTCCG GAATGGGTAT TACTGGATAT CATCCTTAAA
GGCGACCTGT CCGGTATTGA CCTGGGAAAA GAGTTAATGG AGAAAAAAGT ACCGTTCCTT
TACATTTCCG CCAATACCAA CCACCGTACC CTGGAAGCGG CCAAACTAAC TCAGCCCTAT
GGTTTCCTTG TAAAGCCTTT CCGGGAAAAA GACCTCTTTG TGATGCTGGA CATCGCACGA
TACAAACATC AGACAGAAAA CGTGCGCCTG CAGCGGGAAG CTGCCGTAAA AGCAGACACC
AACTGCCTGG ATGCTATTAT CGGGACCAGT CCGAAAACCA AAGAACTGAT AGAACAGATA
AAAATAGTCG CCCCCTCCGA TACCTCTGTG CTGATCACCG GCGAAAGTGG TACCGGTAAG
GAAATGGTGG CACAATGTAT ACACCGTCTC TCTCCACGTG CTAATCGGCC GCTGGTAGTC
GTGAACTGCG CCGCCCTGCC CCTCTCCCTC ATAGAAACAG AGCTCTTCGG TCATGAAAAA
GGCGCTTTCA CCGGCGCAAC ACAGAAACGT ACCGGCCGCT TCGAACAAGC CGATAAAGGC
ACTATCTTCC TCGACGAGAT CGGGGAAATG CCGCCGGATG CACAGGTAAA ACTACTAAGG
GTATTACAGG AAAAAGAGAT CGAACGTGTA GGCGGAGAAA GCCCGGTAAA AGTGGACGTT
CGTATCATTG CAGCTACCAA CAGACAACTG GAAAAAGAAG TAGCAGAAGG CCGGTTCAGA
CTGGACCTCT ATTACCGCCT GAGTATCTTC CCCCTGGAAT TACCGCCGCT GCGAAACAGA
AAAGAAGACA TTCATGCGCT GGCGCACCAT TTCCTGAGAA AATATGCTAC AAAGAATAAT
ATACCGGTAG AAGGTATCAG CGATAATGCG ATGCGGGAAC TGATGTCCTA CGACTGGCCG
GGTAACATCC GCGAACTGGA ACACGTCATC GAAAGACATG TGTTGCTGTC AACCACCCAT
CAGATTGAGC GTATCGATAT GCCGGCAGCC CTCTTACGGG AAACTGAAAC GGTGCAGTCA
GGGAAACTGA AAACAATGGA AGAAGTGGAA CGTGATCATA TCATCAATGC CCTGAAAGCA
GGCAAAGGAA AGGTATCCGG ACCAGGCGGC GCAGCCGAAC TACTTAGTAT GCCCGCCCAG
ACACTCTACT CCCGCATGAA AAAACTGGGC ATTAAACAGA CTTTTAAAGG GTAG
|
|---|
| Protein sequence | MNSKGNILIV EDEFIVANDL RLMLQKAGYA ICGIAASVVQ ARALIEKHSP EWVLLDIILK
GDLSGIDLGK ELMEKKVPFL YISANTNHRT LEAAKLTQPY GFLVKPFREK DLFVMLDIAR
YKHQTENVRL QREAAVKADT NCLDAIIGTS PKTKELIEQI KIVAPSDTSV LITGESGTGK
EMVAQCIHRL SPRANRPLVV VNCAALPLSL IETELFGHEK GAFTGATQKR TGRFEQADKG
TIFLDEIGEM PPDAQVKLLR VLQEKEIERV GGESPVKVDV RIIAATNRQL EKEVAEGRFR
LDLYYRLSIF PLELPPLRNR KEDIHALAHH FLRKYATKNN IPVEGISDNA MRELMSYDWP
GNIRELEHVI ERHVLLSTTH QIERIDMPAA LLRETETVQS GKLKTMEEVE RDHIINALKA
GKGKVSGPGG AAELLSMPAQ TLYSRMKKLG IKQTFKG
|
|---|
| |