| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1311 |
|---|
| Symbol | |
|---|
| ID | 5411956 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 1335916 |
|---|
| End bp | 1336938 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640868542 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_001404472 |
|---|
| Protein GI | 154150854 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.187179 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACAGG CATCGATCTT TATCGTGGAA GACGAGCTCA TCGTAAGCGA GGATCTCCGC
CAGACCCTCG AAGACCTTGG CTATACTGTA GGCGGGGTCG CACATTCGGG AGAGGACGCC
CTTGCAGGAA TAGGAAGTGC CCTCCCCGAT CTTGTGCTTA TGGACGTGCG CCTTGCGGGA
GCCATGGACG GGATAGAGAC CGCGGGCCTC ATCCGGGACA GGTTCGGTCT CCCGGTTATC
TTCCTTACTG CCCATTCCGA CAAAGCCAAT GTCGCCCGCG CCAAACTGAC AGGACCCTAC
GGTTACCTGC TCAAGCCGTT TAGCGATCGC GAGCTTCACA CCACAATAGA GATGGCACTC
TCCCGGTACC ACCTGGATCT TCTCACCCGG GAAAAGGAGC GGACCATACG GGTGCTCGCA
AATGCCATCC CCGATCCTGT CATGCTCCTG GACCGGCGCC TGAAGATCCT TGCCGCAAAC
GATGCCATGG TCCACAACCT GCGTACCGAC CGGCCAGACG AGTGGCAGAC GCCGGTCTTC
CTGCCTGAAA ACAGTGGCAG GTACGCGGCC CTTCTTCCCC GGATCGCAAA AGCCCTTTCC
ACCCTTGTCC CGGGAGTATT CGAGGAGCAG GAGGGTGACA CATGGTACGA GATCTCACTC
TTCCCCGTAG CGGGCCCGGA CCCGGAAGAC CCCCTGCTCC TGATCCAGTA CCACGACATT
ACGGCCCGCA AGAGATTTGA GGAGGAACTC CGGACCGGCG GGCTCTCCCA GATCGAGCAG
AACATGGAGC AGTTCCAGAT CCTCAACGAT GAGATCCGGA ACCCTCTTCA GGCTATCCTC
GGGTACGTCA ACATGGACTG CCGGAAACAC CAGGGCGATA TCATAGAGCA GGTCAGGGCG
ATAAACAATC TTGTCCACCG CCTTGACCAC GGATGGATTG AATCCGGGAA AGTCCGCCAG
TTCCTTATCC GGCATTACCT GGAAGAGGTA CACCCGGGCA GGTCAGCCCA AAAAGAGTCC
TGA
|
|---|
| Protein sequence | MPQASIFIVE DELIVSEDLR QTLEDLGYTV GGVAHSGEDA LAGIGSALPD LVLMDVRLAG
AMDGIETAGL IRDRFGLPVI FLTAHSDKAN VARAKLTGPY GYLLKPFSDR ELHTTIEMAL
SRYHLDLLTR EKERTIRVLA NAIPDPVMLL DRRLKILAAN DAMVHNLRTD RPDEWQTPVF
LPENSGRYAA LLPRIAKALS TLVPGVFEEQ EGDTWYEISL FPVAGPDPED PLLLIQYHDI
TARKRFEEEL RTGGLSQIEQ NMEQFQILND EIRNPLQAIL GYVNMDCRKH QGDIIEQVRA
INNLVHRLDH GWIESGKVRQ FLIRHYLEEV HPGRSAQKES
|
|---|
| |