More than 300 homologs were found in PanDaTox collection
for query gene Cpin_6068 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_6068  response regulator receiver protein  100 
 
 
248 aa  515  1.0000000000000001e-145  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3896  two component transcriptional regulator, LytTR family  32.92 
 
 
245 aa  138  8.999999999999999e-32  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.356034 
 
 
-
 
NC_013730  Slin_3427  two component transcriptional regulator, LytTR family  30 
 
 
256 aa  125  7e-28  Spirosoma linguale DSM 74  Bacteria  normal  0.239231  normal 
 
 
-
 
NC_013037  Dfer_4820  two component transcriptional regulator, LytTR family  27.16 
 
 
244 aa  103  4e-21  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.334432  normal 
 
 
-
 
NC_014230  CA2559_08681  transcriptional regulator  26.94 
 
 
240 aa  102  5e-21  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.803849  n/a   
 
 
-
 
NC_007955  Mbur_1557  response regulator receiver  42.62 
 
 
131 aa  98.6  7e-20  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000000412225  n/a   
 
 
-
 
NC_008609  Ppro_3008  multi-sensor hybrid histidine kinase  40.83 
 
 
953 aa  97.4  2e-19  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_0455  response regulator receiver domain-containing protein  43.22 
 
 
238 aa  96.7  3e-19  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.21261 
 
 
-
 
NC_007796  Mhun_2637  putative PAS/PAC sensor protein  41.53 
 
 
461 aa  94.7  1e-18  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_011726  PCC8801_0428  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  42.74 
 
 
455 aa  93.6  3e-18  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011832  Mpal_0573  response regulator receiver protein  42.37 
 
 
261 aa  93.6  3e-18  Methanosphaerula palustris E1-9c  Archaea  normal  0.666159  normal  0.332219 
 
 
-
 
NC_009712  Mboo_1517  response regulator receiver protein  41.73 
 
 
127 aa  93.2  4e-18  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.394491  normal  0.160821 
 
 
-
 
NC_013161  Cyan8802_0439  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  41.88 
 
 
455 aa  92.4  6e-18  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.444664 
 
 
-
 
NC_009972  Haur_0985  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  40.98 
 
 
704 aa  92.4  6e-18  Herpetosiphon aurantiacus ATCC 23779  Bacteria  decreased coverage  0.000494124  n/a   
 
 
-
 
NC_011831  Cagg_1360  putative PAS/PAC sensor protein  39.83 
 
 
429 aa  92  8e-18  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00110028  hitchhiker  0.000665614 
 
 
-
 
NC_010551  BamMC406_1235  multi-sensor hybrid histidine kinase  38.89 
 
 
989 aa  92  9e-18  Burkholderia ambifaria MC40-6  Bacteria  normal  0.172784  normal 
 
 
-
 
NC_007955  Mbur_0841  response regulator receiver  37.04 
 
 
135 aa  91.7  1e-17  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_007498  Pcar_2709  two component signal transduction response regulator  36.67 
 
 
429 aa  90.1  3e-17  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1808  putative PAS/PAC sensor protein  43.44 
 
 
603 aa  90.1  3e-17  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.268482 
 
 
-
 
NC_010623  Bphy_4529  multi-sensor hybrid histidine kinase  38.1 
 
 
989 aa  90.1  3e-17  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_2285  response regulator receiver  38.84 
 
 
130 aa  89.7  4e-17  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000158247  n/a   
 
 
-
 
NC_009712  Mboo_1311  putative PAS/PAC sensor protein  40 
 
 
340 aa  89.7  4e-17  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.187179 
 
 
-
 
NC_007796  Mhun_3039  response regulator receiver sensor signal transduction histidine kinase  42.61 
 
 
355 aa  89  7e-17  Methanospirillum hungatei JF-1  Archaea  normal  0.610599  normal 
 
 
-
 
NC_007948  Bpro_3511  response regulator receiver sensor signal transduction histidine kinase  36.89 
 
 
384 aa  89  7e-17  Polaromonas sp. JS666  Bacteria  normal  normal  0.253652 
 
 
-
 
NC_014248  Aazo_1725  multi-sensor signal transduction histidine kinase  42.62 
 
 
499 aa  88.6  9e-17  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5058  two component transcriptional regulator, LytTR family  31.8 
 
 
247 aa  88.6  9e-17  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.0000256301  normal  0.0140106 
 
 
-
 
NC_007413  Ava_3003  PAS/PAC sensor hybrid histidine kinase  40.83 
 
 
498 aa  87.8  1e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_2294  response regulator receiver  40 
 
 
134 aa  88.2  1e-16  Methanococcoides burtonii DSM 6242  Archaea  normal  0.371138  n/a   
 
 
-
 
NC_007413  Ava_0066  response regulator receiver sensor signal transduction histidine kinase  40 
 
 
377 aa  87  2e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  0.359193  normal  0.0132857 
 
 
-
 
NC_009712  Mboo_1358  putative PAS/PAC sensor protein  34.94 
 
 
404 aa  87  2e-16  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.873442  normal  0.0258422 
 
 
-
 
NC_009712  Mboo_2407  response regulator receiver protein  39.17 
 
 
182 aa  86.7  3e-16  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_009441  Fjoh_1441  LytTR family two component transcriptional regulator  30.04 
 
 
248 aa  86.7  3e-16  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1460  putative PAS/PAC sensor protein  40.68 
 
 
474 aa  86.7  4e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.81808 
 
 
-
 
NC_009712  Mboo_1912  response regulator receiver protein  40.17 
 
 
263 aa  86.3  5e-16  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.181503  normal  0.732361 
 
 
-
 
NC_009712  Mboo_1528  response regulator receiver protein  38.02 
 
 
450 aa  85.9  6e-16  Candidatus Methanoregula boonei 6A8  Archaea  hitchhiker  0.00374994  normal  0.77554 
 
 
-
 
NC_009712  Mboo_0900  response regulator receiver protein  35.25 
 
 
126 aa  85.1  0.000000000000001  Candidatus Methanoregula boonei 6A8  Archaea  normal  hitchhiker  0.000110071 
 
 
-
 
NC_011729  PCC7424_4564  response regulator receiver sensor signal transduction histidine kinase  41.94 
 
 
376 aa  84.7  0.000000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.531352 
 
 
-
 
NC_007796  Mhun_0118  putative PAS/PAC sensor protein  38.46 
 
 
265 aa  84.3  0.000000000000002  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_008554  Sfum_2639  multi-sensor hybrid histidine kinase  35.25 
 
 
817 aa  84  0.000000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0895  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  33.73 
 
 
701 aa  83.6  0.000000000000003  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_0048  putative PAS/PAC sensor protein  40.98 
 
 
255 aa  83.6  0.000000000000003  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2337  signal transduction histidine kinase  36.07 
 
 
352 aa  83.6  0.000000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_1631  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  36.75 
 
 
561 aa  82.8  0.000000000000005  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.608678  n/a   
 
 
-
 
NC_009712  Mboo_1813  response regulator receiver protein  39.34 
 
 
316 aa  82.8  0.000000000000005  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.445517  normal  0.445863 
 
 
-
 
NC_008751  Dvul_0434  putative PAS/PAC sensor protein  36.67 
 
 
458 aa  82.8  0.000000000000005  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_011832  Mpal_1773  response regulator receiver sensor signal transduction histidine kinase  36.67 
 
 
386 aa  82.4  0.000000000000006  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_009712  Mboo_1242  multi-sensor signal transduction histidine kinase  39.34 
 
 
472 aa  82  0.000000000000007  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.41521  normal 
 
 
-
 
NC_007355  Mbar_A3448  putative transcriptional regulator  36.07 
 
 
143 aa  82.4  0.000000000000007  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.132297  normal  0.0606491 
 
 
-
 
NC_007796  Mhun_1724  response regulator receiver domain-containing protein  33.33 
 
 
352 aa  82  0.000000000000008  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007955  Mbur_0834  response regulator receiver  38.71 
 
 
134 aa  82  0.000000000000009  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000017528  n/a   
 
 
-
 
NC_011832  Mpal_2212  response regulator receiver protein  34.17 
 
 
122 aa  81.6  0.00000000000001  Methanosphaerula palustris E1-9c  Archaea  normal  0.092497  normal  0.290386 
 
 
-
 
NC_011769  DvMF_2677  response regulator receiver sensor hybrid histidine kinase  35.59 
 
 
636 aa  81.6  0.00000000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.068934 
 
 
-
 
NC_009483  Gura_2117  putative PAS/PAC sensor protein  37.7 
 
 
257 aa  81.6  0.00000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1488  response regulator receiver protein  32.59 
 
 
450 aa  80.5  0.00000000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.379239 
 
 
-
 
NC_009483  Gura_1730  multi-sensor signal transduction histidine kinase  37.29 
 
 
591 aa  80.1  0.00000000000003  Geobacter uraniireducens Rf4  Bacteria  normal  0.319599  n/a   
 
 
-
 
NC_011729  PCC7424_1114  response regulator receiver sensor signal transduction histidine kinase  38.4 
 
 
373 aa  79.7  0.00000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009712  Mboo_1497  putative PAS/PAC sensor protein  35.77 
 
 
380 aa  79.7  0.00000000000004  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.506851  normal  0.137069 
 
 
-
 
NC_013173  Dbac_0866  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  40.5 
 
 
701 aa  79  0.00000000000006  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.711392  n/a   
 
 
-
 
NC_011884  Cyan7425_3178  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  36.13 
 
 
426 aa  79  0.00000000000007  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_2686  putative PAS/PAC sensor protein  33.9 
 
 
337 aa  78.6  0.00000000000008  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.209027 
 
 
-
 
NC_007908  Rfer_0893  response regulator receiver sensor signal transduction histidine kinase  35.59 
 
 
359 aa  77  0.0000000000003  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3002  putative PAS/PAC sensor protein  35.2 
 
 
469 aa  76.3  0.0000000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.345319  n/a   
 
 
-
 
NC_009712  Mboo_1609  response regulator receiver protein  35.65 
 
 
463 aa  76.3  0.0000000000005  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.672475  normal  0.374216 
 
 
-
 
NC_009712  Mboo_1807  putative PAS/PAC sensor protein  36.89 
 
 
258 aa  76.3  0.0000000000005  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.254511 
 
 
-
 
NC_008751  Dvul_2282  histidine kinase  36.67 
 
 
667 aa  75.9  0.0000000000005  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1007  putative GAF sensor protein  38.71 
 
 
311 aa  75.9  0.0000000000006  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.164021  normal  0.860345 
 
 
-
 
NC_007490  RSP_4195  response regulator receiver protein  32.48 
 
 
154 aa  73.9  0.000000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.81513  n/a   
 
 
-
 
NC_007948  Bpro_3510  PAS/PAC sensor hybrid histidine kinase  36.13 
 
 
521 aa  74.3  0.000000000002  Polaromonas sp. JS666  Bacteria  normal  normal  0.269968 
 
 
-
 
NC_007955  Mbur_0883  response regulator receiver  34.15 
 
 
273 aa  73.2  0.000000000004  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_4302  signal transduction histidine kinase  33.05 
 
 
343 aa  73.2  0.000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  0.219335  normal  0.321802 
 
 
-
 
NC_007796  Mhun_2645  putative PAS/PAC sensor protein  35.25 
 
 
336 aa  72.8  0.000000000005  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_009430  Rsph17025_4165  hypothetical protein  30.77 
 
 
153 aa  72.8  0.000000000005  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_4189  LytTr DNA-binding region  28.05 
 
 
231 aa  72.4  0.000000000006  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.537023 
 
 
-
 
NC_010717  PXO_04836  two-component system regulatory protein  32.82 
 
 
229 aa  72.4  0.000000000006  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4326  PAS/PAC sensor hybrid histidine kinase  35.59 
 
 
571 aa  71.6  0.00000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_0616  two component transcriptional regulator  30.33 
 
 
249 aa  71.6  0.00000000001  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_2576  response regulator receiver domain-containing protein  32.23 
 
 
122 aa  71.6  0.00000000001  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_013132  Cpin_2085  putative two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
457 aa  70.9  0.00000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0191  two component transcriptional regulator, LytTR family  25.31 
 
 
234 aa  70.9  0.00000000002  Spirosoma linguale DSM 74  Bacteria  normal  0.20678  normal 
 
 
-
 
NC_009664  Krad_2958  response regulator receiver and ANTAR domain protein  32.14 
 
 
229 aa  70.9  0.00000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.799557  normal  0.502809 
 
 
-
 
NC_013757  Gobs_2815  two component transcriptional regulator, winged helix family  33.33 
 
 
238 aa  70.9  0.00000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.180318  n/a   
 
 
-
 
NC_009712  Mboo_2336  response regulator receiver protein  35.77 
 
 
355 aa  70.1  0.00000000003  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.404573  normal  0.642469 
 
 
-
 
NC_008148  Rxyl_2983  two component transcriptional regulator  32 
 
 
228 aa  70.1  0.00000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2711  two component signal transduction response regulator  35.59 
 
 
131 aa  69.3  0.00000000005  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_0064  DNA-binding response regulator  31.93 
 
 
235 aa  69.3  0.00000000006  Lactobacillus gasseri ATCC 33323  Bacteria  normal  0.611294  normal 
 
 
-
 
NC_012669  Bcav_2208  response regulator receiver and ANTAR domain protein  31.09 
 
 
220 aa  68.9  0.00000000007  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_1076  two component transcriptional regulator, winged helix family  31.73 
 
 
228 aa  68.6  0.00000000008  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A2510  transcriptional regulator  32.8 
 
 
157 aa  68.6  0.00000000009  Methanosarcina barkeri str. Fusaro  Archaea  decreased coverage  0.000843612  normal  0.354799 
 
 
-
 
NC_009712  Mboo_2032  response regulator receiver protein  31.3 
 
 
387 aa  68.2  0.0000000001  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.0686114 
 
 
-
 
NC_007796  Mhun_1200  response regulator receiver domain-containing protein  32.23 
 
 
248 aa  67.8  0.0000000001  Methanospirillum hungatei JF-1  Archaea  normal  0.0783054  normal  0.0763711 
 
 
-
 
NC_013132  Cpin_0268  sigma54 specific transcriptional regulator, Fis family  29.41 
 
 
651 aa  68.6  0.0000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008527  LACR_0444  DNA-binding response regulator  31.36 
 
 
233 aa  67.8  0.0000000001  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5460  sigma54 specific transcriptional regulator, Fis family  31.97 
 
 
650 aa  67  0.0000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.665291  normal  0.225769 
 
 
-
 
NC_007413  Ava_3669  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  33.61 
 
 
432 aa  67.4  0.0000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_2543  response regulator receiver protein  33.62 
 
 
121 aa  67.8  0.0000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013132  Cpin_0115  two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
481 aa  67  0.0000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  31.75 
 
 
354 aa  66.6  0.0000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_013037  Dfer_0764  two component transcriptional regulator, LytTR family  27.04 
 
 
245 aa  67  0.0000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.626213 
 
 
-
 
NC_009712  Mboo_0913  response regulator receiver protein  28.81 
 
 
124 aa  66.2  0.0000000004  Candidatus Methanoregula boonei 6A8  Archaea  normal  hitchhiker  0.0000000115879 
 
 
-
 
NC_011661  Dtur_1237  two component transcriptional regulator, winged helix family  35 
 
 
232 aa  66.2  0.0000000004  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
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