| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1808 |
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| Symbol | |
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| ID | 5411987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Methanoregula boonei 6A8 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009712 |
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| Strand | - |
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| Start bp | 1886463 |
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| End bp | 1888274 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640869043 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001404967 |
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| Protein GI | 154151349 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3707] Response regulator with putative antiterminator output domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.268482 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCCG CACGGATCCT GATTGTGGAG GATGAAAGGA TCGTTGCCGA GGACCTCCGC
CTGACTCTTC TCCAGCTGGG ATATGAAGTG ACGGGCAGCG TTGCTTCCGG GGAAGAAGCC
ATCCCTCTTG CGAAGGAGCG TTCCCCTGAT CTTATCCTGA TGGATATTTT TCTTGCAGGG
AAAATGGATG GCATCACTGC TACCGGGGAA ATCCGGAAGT TTTCTGCAGT ACCGGTGATC
TACCTGACAG CTTTTGCCGA TACGACCATC ATGGACAAGG CAAAGATCAC GGAGCCTTAT
GGGTATATCC TCAAACCTTA CCAGGAACGG GAACTCCACA CGATCATCGA GATTGCCCTG
TACAAATACC GTCTCGACCG GCAGCTCCGG GAGAGCGAGG AGCGGTACCG ACGCATCGTG
GAGACTGCTA ACGAGGGGAT ATGGTGCATT GATACCACGG GTCGGACGCT CTTTACCAAC
CAGCGGATGG CCGCACTGCT TGGCTGTTCT GTTGATGACC TTGTCGGCCG CAATGTATCA
GAGTTCATCG TTCCCGATGA CCTGGCAGCA TATACCCGCG AATGGACGGA GCGCCACTTG
GGAAAACGGG GAAACTATGA GCTGCGGTTG CGTCACCGAA ACGGGTCAGT ACGGTGGATG
CACCTCTCAT CAACTCCACT CTATGATGAA AAGGGTGCTT TCTCCGGATC GTTCTCCATG
CTTGCAGACA TCACCGATCG TGTGATTGCA GAAGAAAATC TTAGGCAGAT TAACGAAGAA
CTGGAAGAAC GGGTCTGCAA ACGAACCGCG GATCTCGATC ACCAGGTGCA TTTCCTCCAG
CAGCTCATCG ATACGATCCC AAGCCCGGTA TATTACAAGG ATAGTAATTT CAGGTACCTT
GGGTGCAACA GGACCTTTGA AAGTTATCTG GGCCTTTCAC GGGATGCCAT CATTGGAAAG
ACCACAAATG ATATTGCGCC TCAGGATCTG GCGGCACTGA CCGCGCTCAA GGACCAGTAC
CTGATCAGTC ACCAGGGTAT TCAGGTCTAC CAGATCAAAT TCCCTCACCA GGATGCATCG
GTCCGTGATA TCATCGTTAA AAAAGCCACA TTCAATGACA GCAGCGGCAG GACTCTGGGC
ATCATCGGAG TCTGGATGGA TATCAGCGAC CGTGTCCGGG CCGAAGAGGC ACTCACGGAG
AGTGAAAAGC GGTTCCGGGC AGTGGTCCAG GACCAGTCAG AATTGATCTA CCGGTTCCGG
GTGGACCGGC GGATCCTCTT TGCCAACAAG GCGTTTCTCG ACTACTTTGC CCTTGATGAG
AATAAAACGG TGGGATATAT CTTCCGTCTC CCCATACATC CGGATGACCA GCAGTCAGTT
AATGACCATT TTGCATCGCT GGTGCCGGAA CACCCGGTCG GTCTCATCGA ATATCGGTGC
ACACGGGGTG ACGGTTCTGT TGCCTGGCAG CAATGGAGCA ACCGCGCCTT TTTCGATGGA
GCCGGGAACG TGACCGAGTA CCAGTCTGTG GGCAGGGATA TTACCCGGAA AAAAGAGATT
GAGGAGCAGC AGCGCAGGGC CTTCCAGCAG ATCGAGCAGA ACCTCCAGCA GTTTGCAACC
CTTAACGATC ACATCCGAAA CCCTCTTGCT GTTATCGTCA TGCTGGCCGG GCTCAAAGAG
GATGAGAACT CCCGGAAGAT CATTGAAAAA TCCCGTGAGA TCGATCAGAT TCTCGGGCGG
ATGCACGCAG GGTACCTTGA TTCTGAAAAA GTGAGAATGT TTTTGCGAAA GCACTACGGT
ATCGAAGGGT AA
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| Protein sequence | MTAARILIVE DERIVAEDLR LTLLQLGYEV TGSVASGEEA IPLAKERSPD LILMDIFLAG
KMDGITATGE IRKFSAVPVI YLTAFADTTI MDKAKITEPY GYILKPYQER ELHTIIEIAL
YKYRLDRQLR ESEERYRRIV ETANEGIWCI DTTGRTLFTN QRMAALLGCS VDDLVGRNVS
EFIVPDDLAA YTREWTERHL GKRGNYELRL RHRNGSVRWM HLSSTPLYDE KGAFSGSFSM
LADITDRVIA EENLRQINEE LEERVCKRTA DLDHQVHFLQ QLIDTIPSPV YYKDSNFRYL
GCNRTFESYL GLSRDAIIGK TTNDIAPQDL AALTALKDQY LISHQGIQVY QIKFPHQDAS
VRDIIVKKAT FNDSSGRTLG IIGVWMDISD RVRAEEALTE SEKRFRAVVQ DQSELIYRFR
VDRRILFANK AFLDYFALDE NKTVGYIFRL PIHPDDQQSV NDHFASLVPE HPVGLIEYRC
TRGDGSVAWQ QWSNRAFFDG AGNVTEYQSV GRDITRKKEI EEQQRRAFQQ IEQNLQQFAT
LNDHIRNPLA VIVMLAGLKE DENSRKIIEK SREIDQILGR MHAGYLDSEK VRMFLRKHYG
IEG
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